Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01460 256 / 2e-81 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1) AT4G01190 249 / 3e-79 ATPIPK10 phosphatidylinositol phosphate kinase 10 (.1) AT3G09920 220 / 2e-64 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G21980 219 / 3e-64 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G60890 205 / 4e-59 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT3G07960 202 / 2e-58 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G41210 199 / 8e-57 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G56960 198 / 2e-56 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT1G10900 198 / 2e-56 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G77740 174 / 4e-48 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G139900 [exp] 230 / 2e-68 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 223 / 1e-65 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 221 / 1e-64 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.006G121200 [exp] 221 / 2e-64 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.019G015768 [exp] 218 / 6e-64 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.003G196000 [exp] 211 / 5e-61 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G027900 [exp] 209 / 2e-60 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G211200 [exp] 207 / 1e-59 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 205 / 6e-59 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003028 [exp] 301 / 3e-99 AT4G01190 262 / 7e-84 phosphatidylinositol phosphate kinase 10 (.1) Lus10007856 [exp] 294 / 2e-96 AT1G01460 259 / 2e-82 Phosphatidylinositol-4-phosphate 5-kinase, core (.1) Lus10029661 [exp] 221 / 8e-65 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10014408 [exp] 217 / 3e-63 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10025636 [exp] 216 / 1e-62 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 215 / 1e-62 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10021505 [exp] 214 / 5e-62 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 214 / 6e-62 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10015456 [exp] 210 / 1e-60 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10001377 [exp] 210 / 2e-60 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01504 [poplar] [flax] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase
Representative CDS sequence Show only first row Show all	>Potri.014G093300.2 pacid=42763498 polypeptide=Potri.014G093300.2.p locus=Potri.014G093300 ID=Potri.014G093300.2.v4.1 annot-version=v4.1 ATGGCGATGCATTTCAAAGACCTTCCTTCTCTGGCATTCAGGGATGCTCAAAGGAACACGATACGATATTGCAAACAGGATTCCGGACGCGTTGATGATC GCGTGTATAGTGATTATAAATGCAAGGATTACTGTCCCGATGTTTTCAGACGCATACAAGAGCTCAGAAATATTGATCGCTCTGATTACATGATGTCGAT ACGTTCAGATTTGACCCTAAGGGAGATATTGTCAGCAGGAAAGGATACTCGTGTGATCCCTGTCAGCACTGATGACCGCCTTGTTATAGGAATCGTGCCA AAATCTGAAAAGAAGGTAATGCTGCGTGTGCTTCCAAGCTATTGTTTCCATCTTGAAATGAACCGTGATTCACTGTTAAGCATCTTATATGGAATCCACT ATATGAAGCCAATTGGTGGTCCTAAGGTTTACTTTTCTGTCTATTCCAGAGTGATTCCATCAGATGCTAACATATTCAGGGTTTTTGATCTGAAAGGCTC GTGGAAAGGACGAAAAATAAACAAACCAAGAGCCAAAGAGAACATCATATTAAAGGATATGGACTTCGGTTTTCGTTTTTACCTAGATCCATTGATCCAA GAAAAACTCTTAGGGCAAATCAAGCATGATTGTGAGTTTTTGGAAGCTCAGGGTATAATGGATTACAGTCTTTTGATTTGTATAGCTTTGCCACCTCAAG ATAAAGATTCGGTTGATAGCAGAAGTTCCTATAGCGAAGTTACATCCTCCTGCCACTCTCCTATGAATTCGAATGATAGCAGAAATTCCCATGTCCAGAA TACTGGCTATGGAGACTCTTCTCCTGTAAATTCAGTTGATAGCAGAAGTTTTGATAGCGATAGAATCTCAAGTTGCTCTTCAGAAGAAGTTGAGGGAACA CAGTCAATTTATTCTGACATTAGCAAAGAGCTTGATAGTTCTAAATTTAGATTAGGTGTGGGAATGCCAGCACGTACTATCCGATCAAAACTGATTAAAG CAGGACATGTGCCATCCACTCGAAGCGCTGGAGGATTGGAGTGCGCCGACGTTGTGTTATATTTCTCAATTGTTGATATATTTCAGAATTACAATCTGGC TAAGCGCCTTGAACATGCTTACAAGTCAATCAAGTACGACTCCAAGTCAATTGTTACAGTGAATCCCAAGGCATATGCTTCTCGCTTCCAAGATTTTATG AGCCTAATTTTTCATGTGGACTGCTGA
AA sequence Show only first row Show all	>Potri.014G093300.2 pacid=42763498 polypeptide=Potri.014G093300.2.p locus=Potri.014G093300 ID=Potri.014G093300.2.v4.1 annot-version=v4.1 MAMHFKDLPSLAFRDAQRNTIRYCKQDSGRVDDRVYSDYKCKDYCPDVFRRIQELRNIDRSDYMMSIRSDLTLREILSAGKDTRVIPVSTDDRLVIGIVP KSEKKVMLRVLPSYCFHLEMNRDSLLSILYGIHYMKPIGGPKVYFSVYSRVIPSDANIFRVFDLKGSWKGRKINKPRAKENIILKDMDFGFRFYLDPLIQ EKLLGQIKHDCEFLEAQGIMDYSLLICIALPPQDKDSVDSRSSYSEVTSSCHSPMNSNDSRNSHVQNTGYGDSSPVNSVDSRSFDSDRISSCSSEEVEGT QSIYSDISKELDSSKFRLGVGMPARTIRSKLIKAGHVPSTRSAGGLECADVVLYFSIVDIFQNYNLAKRLEHAYKSIKYDSKSIVTVNPKAYASRFQDFM SLIFHVDC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01460		ATPIPK11	Phosphatidylinositol-4-phospha...		Potri.014G093300 [exp]	0	1
AT2G13542			unknown protein		Potri.013G008750 [exp]	1.00	0.9773
AT4G33230			Plant invertase/pectin methyle...		Potri.003G021300 [exp]	2.00	0.9618
AT4G23490			Protein of unknown function (D...		Potri.012G107800 [exp]	28.21	0.9470
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G120901 [exp]	31.38	0.9440
AT3G21490			Heavy metal transport/detoxifi...		Potri.010G015300 [exp]	32.03	0.9393
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Potri.001G338800 [exp]	34.89	0.9411
					Potri.010G007402 [exp]	37.41	0.9408
AT5G16100			unknown protein		Potri.006G223100 [exp]	40.49	0.9400
					Potri.016G129050 [exp]	41.20	0.8002
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	43.26	0.9395

Compare expression of checked genes

Potri.014G093300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.