Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01140 139 / 2e-39 Protein of unknown function (DUF1191) (.1) AT3G08600 130 / 1e-35 Protein of unknown function (DUF1191) (.1) AT4G23720 109 / 8e-28 Protein of unknown function (DUF1191) (.1) AT4G11950 86 / 3e-19 Protein of unknown function (DUF1191) (.1) AT1G62981 73 / 2e-14 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) AT4G22900 72 / 3e-14 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166900 [exp] 413 / 1e-146 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1) Potri.001G096000 [exp] 177 / 9e-54 AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1) Potri.003G135400 [exp] 171 / 1e-51 AT4G23720 190 / 1e-58 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 162 / 8e-48 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 151 / 1e-43 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.001G112800 [exp] 114 / 9e-30 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Potri.003G119400 [exp] 95 / 1e-22 AT4G11950 227 / 9e-73 Protein of unknown function (DUF1191) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028743 [exp] 146 / 1e-41 AT4G23720 178 / 6e-54 Protein of unknown function (DUF1191) (.1) Lus10017546 [exp] 142 / 4e-40 AT4G23720 181 / 5e-55 Protein of unknown function (DUF1191) (.1) Lus10007859 [exp] 140 / 3e-39 AT4G01140 115 / 9e-30 Protein of unknown function (DUF1191) (.1) Lus10003033 [exp] 90 / 1e-20 AT4G01140 89 / 6e-20 Protein of unknown function (DUF1191) (.1) Lus10001191 [exp] 83 / 6e-18 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10006713 [exp] 82 / 2e-17 AT4G11950 181 / 2e-54 Protein of unknown function (DUF1191) (.1) Lus10024479 [exp] 72 / 2e-14 AT4G11950 230 / 1e-73 Protein of unknown function (DUF1191) (.1) Lus10014139 [exp] 71 / 7e-14 AT4G22900 169 / 1e-50 Protein of unknown function (DUF1191) (.1) Lus10024481 [exp] 63 / 2e-11 AT1G62981 158 / 7e-47 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Lus10002998 [exp] 62 / 1e-10 AT4G11950 224 / 2e-71 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [poplar] [flax] Gain PF06697 [poplar] [flax] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Potri.014G094000.1 pacid=42763823 polypeptide=Potri.014G094000.1.p locus=Potri.014G094000 ID=Potri.014G094000.1.v4.1 annot-version=v4.1 ATGGGGTGCAACAGAAGCTGGCACATCTTTCCTCTGTTCTTGTTGTTAATTTCACCTGTTCATGGCTTAACAAGCTATGACCCTGAGTCTTTAGATGCGT TGATTCACCAATACGCAATGAAGGCACAAGCAAAGAAACGGACAGGCACTTCATTAAAAGTTCCTCTCCCTGCTAATTTCTCTGGAATGGAAGTCTCGGT TGTTAGGCTAAGAAGTGGTCATTTCTGGGAAAGAGGAGCCAATTTCACTTCTTTTTTTATCCCACCTAGGATTACTCCATTCCCATTTGTGAAGAGACTG TCTTTAGTATATCAAAACTTGGGAAATTGGTCAACTCTTTATTACAGGGTGCCTGATTATTCATTAGTTGCTCCTGTTGTTGGCTTCATGGCTTATGATG CTTCAAATTTAAGTGCATTGGGTAATGAGGCACTCAAGTTTAACGTTCTGGGTGACCCCATTTCGATCAAGTTTCCTAACCTAATGACAAAAGGTGATCC TAAGTTATTAAAATGCGTCGAGCTTGGTCCAGATGGATTGGTCCACTTTAGGAACATAACTAACGAAAATACTTGCATGACACAAGGTGATGGTCATTTT TCAGTTGCTGTTAAGAACTCTGACGTGGATAAGAATAACAGAGTTTGGATATGGTGGGTGATTGGATTTGGAGCTGCGATTCTTGCGTTGGTTTTGCTGG GTGTGATTGGATTCACCACTTTTAAACTAGTGAGGAGTGAGAGATTCAGAGAGATGGAGGCAGAGTCTGAAAATGGGGTGGCCCTTGATACAACTTCGAT TGGAAGAAGTAAAATACCTTCATCATCAATGGTAAGAACCCAGCCAACCCTTGAGCAAGATTATGTTCCTTGA
AA sequence Show only first row Show all	>Potri.014G094000.1 pacid=42763823 polypeptide=Potri.014G094000.1.p locus=Potri.014G094000 ID=Potri.014G094000.1.v4.1 annot-version=v4.1 MGCNRSWHIFPLFLLLISPVHGLTSYDPESLDALIHQYAMKAQAKKRTGTSLKVPLPANFSGMEVSVVRLRSGHFWERGANFTSFFIPPRITPFPFVKRL SLVYQNLGNWSTLYYRVPDYSLVAPVVGFMAYDASNLSALGNEALKFNVLGDPISIKFPNLMTKGDPKLLKCVELGPDGLVHFRNITNENTCMTQGDGHF SVAVKNSDVDKNNRVWIWWVIGFGAAILALVLLGVIGFTTFKLVRSERFREMEAESENGVALDTTSIGRSKIPSSSMVRTQPTLEQDYVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01140			Protein of unknown function (D...		Potri.014G094000 [exp]	0	1
AT5G08350			GRAM domain-containing protein...		Potri.005G088700 [exp]	4.79	0.8093
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.019G035500 [exp]	12.96	0.7867
AT1G17030			unknown protein		Potri.004G062000 [exp]	19.51	0.8013
AT3G59110			Protein kinase superfamily pro...		Potri.005G203300 [exp]	30.09	0.7902
AT4G36195			Serine carboxypeptidase S28 fa...		Potri.007G015400 [exp]	34.30	0.7168
AT4G30410			sequence-specific DNA binding ...		Potri.006G177000 [exp]	37.22	0.7735
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.015G133800 [exp]	41.73	0.7570
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.007G023400 [exp]	49.18	0.7366
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.015G092800 [exp]	54.63	0.7724
AT5G48460			Actin binding Calponin homolog...		Potri.002G251600 [exp]	74.39	0.7441

Compare expression of checked genes

Potri.014G094000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.