Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46270 340 / 1e-114 bZIP GBF3 G-box binding factor 3 (.1.2) AT4G01120 290 / 7e-95 bZIP ATBZIP54, GBF2 BASIC REGION/LEUCINE ZIPPER MOTIF 5, G-box binding factor 2 (.1) AT2G35530 159 / 5e-44 bZIP AtbZIP16 basic region/leucine zipper transcription factor 16 (.1) AT1G32150 130 / 1e-33 bZIP AtbZIP68 basic region/leucine zipper transcription factor 68 (.1) AT4G36730 115 / 9e-29 bZIP GBF1 G-box binding factor 1 (.1.2) AT5G60830 62 / 5e-11 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT5G15830 51 / 3e-07 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT3G30530 50 / 4e-07 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT1G68880 49 / 4e-07 bZIP ATBZIP basic leucine-zipper 8 (.1) AT1G13600 49 / 2e-06 bZIP ATBZIP58 basic leucine-zipper 58 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167100 [exp] 592 / 0 AT2G46270 355 / 1e-120 G-box binding factor 3 (.1.2) Potri.005G126000 [exp] 159 / 1e-44 AT4G36730 322 / 2e-109 G-box binding factor 1 (.1.2) Potri.007G029400 [exp] 156 / 1e-43 AT4G36730 302 / 1e-101 G-box binding factor 1 (.1.2) Potri.003G097600 [exp] 143 / 2e-38 AT2G35530 447 / 1e-156 basic region/leucine zipper transcription factor 16 (.1) Potri.001G136000 [exp] 133 / 1e-34 AT2G35530 424 / 3e-147 basic region/leucine zipper transcription factor 16 (.1) Potri.015G047700 [exp] 56 / 1e-08 AT5G60830 86 / 8e-21 basic leucine-zipper 70 (.1) Potri.008G113400 [exp] 48 / 3e-06 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.006G277800 [exp] 49 / 4e-06 AT5G24800 222 / 2e-71 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) Potri.010G135200 [exp] 48 / 5e-06 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005146 [exp] 404 / 3e-138 AT2G46270 340 / 1e-113 G-box binding factor 3 (.1.2) Lus10003034 [exp] 402 / 9e-138 AT2G46270 333 / 3e-111 G-box binding factor 3 (.1.2) Lus10041720 [exp] 132 / 1e-34 AT4G36730 271 / 1e-89 G-box binding factor 1 (.1.2) Lus10014324 [exp] 125 / 3e-32 AT4G36730 291 / 2e-97 G-box binding factor 1 (.1.2) Lus10026033 [exp] 125 / 6e-32 AT4G36730 273 / 4e-90 G-box binding factor 1 (.1.2) Lus10024030 [exp] 106 / 2e-25 AT4G36730 267 / 3e-88 G-box binding factor 1 (.1.2) Lus10029101 [exp] 51 / 5e-07 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10018662 [exp] 49 / 6e-07 AT3G49760 82 / 2e-20 basic leucine-zipper 5 (.1) Lus10013059 [exp] 50 / 8e-07 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10007726 [exp] 48 / 2e-06 AT3G49760 84 / 3e-21 basic leucine-zipper 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF07777 [poplar] [flax] MFMR G-box binding protein MFMR CL0018 [poplar] [flax] PF16596 [poplar] [flax] MFMR_assoc Disordered region downstream of MFMR
Representative CDS sequence Show only first row Show all	>Potri.014G094200.7 pacid=42763066 polypeptide=Potri.014G094200.7.p locus=Potri.014G094200 ID=Potri.014G094200.7.v4.1 annot-version=v4.1 ATGTGTCATGATTCAATCATTATCTTCTGTTTTTCTTCAATATGTTCACACTCTGCTCCCACACCTTTGCTAACCTGTCTCCTTTTGTTGCAGGTGAGAG AGTTAAAGCAGTTTTGGCGTATCATCTCCAAATTAAGTAAGGATTTTTATTTTTTTTGGTGTTTTACCATGGGAAACAATGAAGAGGGAAAGTCTTCTGC GTCTGATAAATCTTCTCCTGCCCAACAAGATCAGACCAGCATTCATGTATATCCTGATTGGGCAGCTATTCAGGCATATTATGGATCCCGAGTGGCTCTC CCACCATATTACAACTCGGGTGTGGCATCTGGCCATGCCCCCCATCCTTATATGTGGGGCCCGCCGCAGCCTATGATGGCTACTTATGGGGCACCATATG CAGCAATCTATTCACATGGAGGAGTGTATGCACATCCGGCTGTTCCGATTGGATCCCATCCGCATGGTCCTGGGGTTCTGTCATCTCCTGCTGCTCATAC CCCTTTGAGTGCAGAAACACCTACAAAATCTTCAGGAAATACTGATCAGGGTTTAATGAAGAAGTTGAAAGGGTTTGATGGGCTTGCAATGTCAATAGGC AATGGTGATGCTGAGAGTGCAGAGGGTGGGAGTAGGCTACCTCAGAGCATGGAGACAGAAGGTTCCAGTGATGGAAGTGATGGGAATACAGCTAGGGGAA AGAAAAGGAGCCGTGAGGGAACACCAACTGTTGATCATCATACCACAGGTGGAGATACAAAAACAGAGACACATTGTAGCCCTCTTCTTGGAGAGGTGAA TCCATCCACTGACAAGGTTTTGGGTGCAGTTGTTGATCCTGGTATGACCAAAGCATTGGAGCTCAGAAACCCTCCTAGTGTGAATGTTGCTAAGACAAAT CCTGCAACTATTCCTCAACCTGGTGCCATGCTGCCTTCTGAAGCCTGGTCACCGAATGACCGGGAGCTGAAACGAGAGAGGAGGAAGCAATCAAACAGAG AATCTGCTAGAAGGTCAAGATTAAGGAAGCAGGCCGAGGCTGAAGAACTCGCACACAAAGTAGAAACGTTGACTACAGTGAACATGACACTCAAATCAGA AATAGATCAGTTTACAGAGAAATCGCAGAAACTAAGGCTTGAAAATGCAGCATTAACGGAGAAACTCAAGAATGCGCAACTAGGACCCACGCAAGAAATA ATTTTAAACAACATTGATGAGCAGCGAAGCTCCAACTCTGGTGCCAAGCTACATCAACTCATGGATGCAAGCCCCAGAGCTGATGCTGTGGCTGCTGGCT GA
AA sequence Show only first row Show all	>Potri.014G094200.7 pacid=42763066 polypeptide=Potri.014G094200.7.p locus=Potri.014G094200 ID=Potri.014G094200.7.v4.1 annot-version=v4.1 MCHDSIIIFCFSSICSHSAPTPLLTCLLLLQVRELKQFWRIISKLSKDFYFFWCFTMGNNEEGKSSASDKSSPAQQDQTSIHVYPDWAAIQAYYGSRVAL PPYYNSGVASGHAPHPYMWGPPQPMMATYGAPYAAIYSHGGVYAHPAVPIGSHPHGPGVLSSPAAHTPLSAETPTKSSGNTDQGLMKKLKGFDGLAMSIG NGDAESAEGGSRLPQSMETEGSSDGSDGNTARGKKRSREGTPTVDHHTTGGDTKTETHCSPLLGEVNPSTDKVLGAVVDPGMTKALELRNPPSVNVAKTN PATIPQPGAMLPSEAWSPNDRELKRERRKQSNRESARRSRLRKQAEAEELAHKVETLTTVNMTLKSEIDQFTEKSQKLRLENAALTEKLKNAQLGPTQEI ILNNIDEQRSSNSGAKLHQLMDASPRADAVAAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Potri.014G094200 [exp]	0	1
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	1.41	0.8862
AT1G69770		CMT3	chromomethylase 3 (.1)		Potri.003G215800 [exp]	1.41	0.8652	CMT3.2
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.002G094200 [exp]	3.00	0.8532	DREB19
AT5G45190			Cyclin family protein (.1.2)		Potri.002G032300 [exp]	9.38	0.8097
AT3G20250		APUM5	pumilio 5 (.1)		Potri.008G004300 [exp]	14.69	0.8152
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.003G121000 [exp]	17.20	0.8135
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.002G110800 [exp]	18.43	0.7926
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	18.54	0.8300
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	20.49	0.8069
AT1G29350			Kinase-related protein of unkn...		Potri.001G353100 [exp]	20.73	0.8123

Compare expression of checked genes

Potri.014G094200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.