Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RRP41.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61620 379 / 7e-135 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G27490 106 / 1e-27 3'-5'-exoribonuclease family protein (.1) AT3G46210 80 / 9e-18 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT5G14580 56 / 5e-09 polyribonucleotide nucleotidyltransferase, putative (.1) AT3G03710 55 / 1e-08 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT1G60080 41 / 0.0003 3'-5'-exoribonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G212500 [exp] 112 / 4e-30 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 106 / 1e-27 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.018G043600 [exp] 76 / 3e-16 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.001G347900 [exp] 62 / 6e-11 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.013G065700 [exp] 60 / 4e-10 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.019G040100 [exp] 58 / 1e-09 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.006G239100 [exp] 41 / 0.0003 AT3G46210 295 / 4e-102 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005148 [exp] 404 / 4e-144 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2) Lus10003036 [exp] 402 / 2e-143 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2) Lus10000255 [exp] 289 / 3e-100 AT3G61620 280 / 4e-97 3'-5'-exoribonuclease family protein (.1.2) Lus10037395 [exp] 110 / 4e-29 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10041318 [exp] 97 / 5e-24 AT4G27490 414 / 4e-148 3'-5'-exoribonuclease family protein (.1) Lus10009221 [exp] 69 / 6e-14 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10037991 [exp] 61 / 9e-11 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10022250 [exp] 60 / 3e-10 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10008763 [exp] 60 / 4e-10 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001332 [exp] 57 / 3e-09 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF01138 [poplar] [flax] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [poplar] [flax] PF03725 [poplar] [flax] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Potri.014G094300.1 pacid=42764007 polypeptide=Potri.014G094300.1.p locus=Potri.014G094300 ID=Potri.014G094300.1.v4.1 annot-version=v4.1 ATGGAGTTCGTGAACCCTGAAGGTCTTCGTCTGGATGGTCGCCGCCCCATGGAAATGAGGCAACTTAGAGCACAAATCGGTGCTGTAGCCAAAGCAGACG GCTCTGCTGTTTTTGAGATGGGAAATACTAAAGTAATTGCTGCCGTTTATGGACCTAGAGAGGTTCAAAATAGGAGCCAACAGATTAACGACCAAGCACT GGTGCGGTGTGAGTACAGCATGGCTAATTTCAGTACAGGAGATCGGAGGCGAAAACCGAAGGGTGACAGGCGATCAACAGAGATTTCGTTGGTTATTCGT CAGGCAATGGAAGAATGCATATTGACGAATCTAATGCCCCGTTCTCAGATTGATATATATGTGCAAGTTCTCCAAGCTGATGGAGGAACTAGATCTGCAT GCATCAATGCTGCAACTTTGGCCTTAGCAGATGCAGGTATCCCCATGCGTGATCTTGTTACTTCTTGTAGTGCTGGATTCCTCAATAGCACTCCTCTTCT TGATTTAAACTATGTTGAAGACAGTGCAGGAGGTCCTGATGTCACTGTTGGAATCCTACCCAAGTTGGACAAAGTGACACTTCTTCAGATGGATGCTAAG CTGCCAATTGATACCTTTGAAAATGTTATGCAACTTGCTGTTGAAGGCTGCAAGGCAATAGCAAATTACATTCGTGAAGTTTTGCTAGAGAATACCAAAC AGCTGGAGTATCGACGTGGCTTGTAG
AA sequence Show only first row Show all	>Potri.014G094300.1 pacid=42764007 polypeptide=Potri.014G094300.1.p locus=Potri.014G094300 ID=Potri.014G094300.1.v4.1 annot-version=v4.1 MEFVNPEGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIR QAMEECILTNLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGFLNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVTLLQMDAK LPIDTFENVMQLAVEGCKAIANYIREVLLENTKQLEYRRGL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Potri.014G094300 [exp]	0	1	RRP41.1
AT4G33380			unknown protein		Potri.002G127700 [exp]	2.00	0.8517
AT1G55340			Protein of unknown function (D...		Potri.001G004000 [exp]	6.48	0.7764
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Potri.008G092400 [exp]	10.00	0.7846
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Potri.009G034700 [exp]	12.16	0.8059
					Potri.008G113500 [exp]	13.96	0.8082
AT5G01350			unknown protein		Potri.006G101901 [exp]	21.21	0.8051
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081400 [exp]	24.65	0.7429
AT2G14830			Regulator of Vps4 activity in ...		Potri.009G090100 [exp]	25.21	0.7262
					Potri.003G102300 [exp]	26.11	0.7431
AT1G32310			unknown protein		Potri.001G138700 [exp]	29.84	0.7884

Compare expression of checked genes

Potri.014G094300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.