Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46300 174 / 6e-54 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01110 130 / 1e-36 unknown protein AT1G01453 128 / 6e-36 unknown protein AT2G30505 53 / 4e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G65690 48 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167300 [exp] 343 / 9e-121 AT2G46300 177 / 5e-55 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 78 / 8e-17 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 75 / 8e-16 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.018G052500 [exp] 62 / 3e-11 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.012G145500 [exp] 57 / 1e-09 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.006G228600 [exp] 56 / 5e-09 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein Potri.015G148200 [exp] 55 / 8e-09 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.004G197600 [exp] 49 / 1e-06 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.017G154000 [exp] 44 / 3e-05 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010130 [exp] 142 / 8e-42 AT2G46300 139 / 2e-40 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10012638 [exp] 78 / 3e-18 AT2G46300 75 / 1e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 69 / 1e-13 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 60 / 2e-10 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10037638 [exp] 60 / 3e-10 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 52 / 1e-07 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031317 [exp] 43 / 0.0001 AT1G54540 231 / 1e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031888 [exp] 42 / 0.0003 AT1G54540 236 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G094400.1 pacid=42763716 polypeptide=Potri.014G094400.1.p locus=Potri.014G094400 ID=Potri.014G094400.1.v4.1 annot-version=v4.1 ATGGCAGACAAACCAATGAAGCCAGTTCTCCCAAGACCACCAGGTTACAGAGACCCCAATCACCCGGTAAAATCTGCCCGGAGACCGCTACCTACAAAGA CATTAGTGCCTCATTCATTCCAGCCAAGGAAAAGACGGTCCAGGCATTGGTGTCGTCTATGCTTATGCTGCTTAATCCTTCTCCTTATCATTGTCATTCT TCTTCTGATAATCTCAGGTGGTCTATTTTACATCTGGTTCGAACCTAAACTCCCCGTTTTCCACCTCCAGTCTTTTAAATTCCCCACTTTTAGCGTCACC AAGAAATCAGATGGCACGTACCTTAAGGCCAAGATGGTTGCAAGAATTGAAGTTAGGAATCCTAATGAAAAAATTATATATCATTTCGGAGAGTCTAAGG TGGAAACTACAACGGGAGACGAAGAAGTTAATTTGGGATCGACGAGCTTGCCTAAGTTCACACAGGAAAAAGGGAATGCGACGAGTTTGAAAACCGTGAC TAATGTGAACAATGAGCTGATTGAGGATCGAATTGGATCCAAGATTCTTCATCAGTTCACGAGCAAGAAATTGAAGGTGAAGATGAATGTGAAAACAAGA GTTGGAATTGGTGTTGCGGGGATGAAGACAGGGTTGCTGGGGGCGGAAGTTTTGTGCGGAGGTGTAACGTTGAAGGAGACTGAAAGTGGTGAGATGCCAA GATGCGTCATGAAAATACTTCAATGGATCATCATCCGCTGA
AA sequence Show only first row Show all	>Potri.014G094400.1 pacid=42763716 polypeptide=Potri.014G094400.1.p locus=Potri.014G094400 ID=Potri.014G094400.1.v4.1 annot-version=v4.1 MADKPMKPVLPRPPGYRDPNHPVKSARRPLPTKTLVPHSFQPRKRRSRHWCRLCLCCLILLLIIVILLLIISGGLFYIWFEPKLPVFHLQSFKFPTFSVT KKSDGTYLKAKMVARIEVRNPNEKIIYHFGESKVETTTGDEEVNLGSTSLPKFTQEKGNATSLKTVTNVNNELIEDRIGSKILHQFTSKKLKVKMNVKTR VGIGVAGMKTGLLGAEVLCGGVTLKETESGEMPRCVMKILQWIIIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46300			Late embryogenesis abundant (L...		Potri.014G094400 [exp]	0	1
AT5G58530			Glutaredoxin family protein (....		Potri.001G280400 [exp]	2.00	0.9246
AT4G33080			AGC (cAMP-dependent, cGMP-depe...		Potri.006G224800 [exp]	2.44	0.9270
AT1G13635			DNA glycosylase superfamily pr...		Potri.010G137300 [exp]	4.89	0.9004
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.009G089800 [exp]	7.21	0.8944
AT2G45360			Protein of unknown function (D...		Potri.014G098800 [exp]	8.12	0.8789
AT4G17920			RING/U-box superfamily protein...		Potri.001G140900 [exp]	10.39	0.8989
AT4G08810		SUB1	calcium ion binding (.1)		Potri.001G005500 [exp]	11.31	0.8972
AT5G58530			Glutaredoxin family protein (....		Potri.009G075600 [exp]	12.96	0.8791
AT3G24240			Leucine-rich repeat receptor-l...		Potri.002G070900 [exp]	12.96	0.8947
AT2G40370		LAC5	laccase 5 (.1)		Potri.008G073700 [exp]	13.22	0.8725	GLAC90.1

Compare expression of checked genes

Potri.014G094400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.