Plant FIBer expression Database

Potri.014G094600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G167500
[exp]
339 / 4e-119 ND /
Potri.015G022900
[exp]
41 / 0.0005 AT5G53280 259 / 2e-86 plastid division1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027574
[exp]
42 / 0.0002 AT5G53280 273 / 6e-92 plastid division1 (.1)
Lus10039325
[exp]
42 / 0.0003 AT5G53280 268 / 1e-89 plastid division1 (.1)
PFAM info
Representative CDS sequence
>Potri.014G094600.2 pacid=42763904 polypeptide=Potri.014G094600.2.p locus=Potri.014G094600 ID=Potri.014G094600.2.v4.1 annot-version=v4.1
ATGGAATCAAGGAGGGACCTGCGGACTCTCATTGAGAGAGCATGGGGTTTGCATGATGGGCTCGCTGAAGAAATCAAAAACATTAACATCTACTTCTGCA
GGTTCTGTTCAGAACATGGTCGTTATTATAGCATAGTGGAGACCCCATTTCAGGAGAAGGAAGGATTGATTGCCATTAAGGATTCATTGAAGGAAGTAGG
GAACGTGCTTATGATTTTACAGAGATTACGATCATGGCAACCGATTGATAGGCAAGAGGCAATTACACGATTAGAAGGAAGCTGGTTAATTCTCATGGAA
AAGGTGGCACAATATCAAGGAAGACCACTTGCTGTGGTGGAAGAATTGAACGCCTGTTTTAGCAATGGAAAGACTGTTTTTGACTGGAAGTTGAGTGAGA
AAAGGAAGATCAAAGGTGATGGTTCCAATGTTCAAGAGGAAAAGAGGATGGCAACTGCAGGTTTTGTTGTTTGTTGGATTAGAATGTTATTCAACCAGTG
GAGGTGGCAAAAAGCTATTGGAGTTGCAGCAAAACTGATTTTGGTTTCAACTAGCGTTTCATCTACAGTAAAATTCTGCCATTGCAGGCTACATTGTTGC
AGTTCGCAAAGGAAAGTTGTTTCATTGGTTGAACCAGTATATTCAAGAACAAAAGAAAACAGTACAGCATTATCCCCCTCAAACAGTCCTCTAGATGTTT
TTTATGGCAGGGGATGA
AA sequence
>Potri.014G094600.2 pacid=42763904 polypeptide=Potri.014G094600.2.p locus=Potri.014G094600 ID=Potri.014G094600.2.v4.1 annot-version=v4.1
MESRRDLRTLIERAWGLHDGLAEEIKNINIYFCRFCSEHGRYYSIVETPFQEKEGLIAIKDSLKEVGNVLMILQRLRSWQPIDRQEAITRLEGSWLILME
KVAQYQGRPLAVVEELNACFSNGKTVFDWKLSEKRKIKGDGSNVQEEKRMATAGFVVCWIRMLFNQWRWQKAIGVAAKLILVSTSVSSTVKFCHCRLHCC
SSQRKVVSLVEPVYSRTKENSTALSPSNSPLDVFYGRG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G094600
[exp]
0 1
AT4G35470 PIRL4, DREB1C plant intracellular ras group-... Potri.005G098600
[exp]
2.64 0.7189
AT4G24250 ATMLO13, MLO13 MILDEW RESISTANCE LOCUS O 13, ... Potri.003G151750
[exp]
9.64 0.6976
AT3G05270 Plant protein of unknown funct... Potri.002G083400
[exp]
15.23 0.6784
AT1G03905 ABCI19 ATP-binding cassette I19, P-lo... Potri.005G226600
[exp]
23.45 0.6252 Pt-POP.1
AT1G03790 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-... Potri.017G013400
[exp]
23.66 0.6835
AT1G48600 AtPMEAMT phosphoethanolamine N-methyltr... Potri.012G047301
[exp]
26.00 0.6130
AT5G38220 alpha/beta-Hydrolases superfam... Potri.017G117633
[exp]
26.26 0.6071
AT2G17230 EXL5 EXORDIUM like 5 (.1) Potri.004G206600
[exp]
26.98 0.6813
AT3G55700 UDP-Glycosyltransferase superf... Potri.010G195600
[exp]
31.43 0.6971
AT1G80160 GLYI7 glyoxylase I 7, Lactoylglutath... Potri.003G009000
[exp]
36.16 0.6673

Potri.014G094600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.