Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TUBG1.1,TUBG1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61650 961 / 0 TUBG1 gamma-tubulin (.1) AT5G05620 958 / 0 TUBG2 ,ATGCP2 GAMMA-TUBULIN 2, ARABIDOPSIS THALIANA GAMMA-TUBULIN COMPLEX PROTEIN 2, gamma-tubulin complex protein 2 (.1) AT5G44340 273 / 6e-87 TUB4 tubulin beta chain 4 (.1) AT2G29550 273 / 1e-86 TUB7 tubulin beta-7 chain (.1) AT5G23860 273 / 1e-86 TUB8, b-TUB tubulin beta 8 (.1.2) AT5G62700 271 / 4e-86 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G62690 271 / 4e-86 TUB2 tubulin beta chain 2 (.1) AT1G20010 271 / 4e-86 TUB5 tubulin beta-5 chain (.1) AT4G20890 271 / 6e-86 TUB9 tubulin beta-9 chain (.1) AT1G75780 271 / 7e-86 TUB1 tubulin beta-1 chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167800 [exp] 980 / 0 AT5G05620 958 / 0.0 GAMMA-TUBULIN 2, ARABIDOPSIS THALIANA GAMMA-TUBULIN COMPLEX PROTEIN 2, gamma-tubulin complex protein 2 (.1) Potri.009G040200 [exp] 274 / 5e-87 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2) Potri.001G464400 [exp] 273 / 9e-87 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1) Potri.006G095000 [exp] 273 / 9e-87 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.011G162500 [exp] 273 / 1e-86 AT5G23860 847 / 0.0 tubulin beta 8 (.1.2) Potri.001G106100 [exp] 272 / 1e-86 AT5G23860 858 / 0.0 tubulin beta 8 (.1.2) Potri.003G125400 [exp] 272 / 2e-86 AT5G23860 857 / 0.0 tubulin beta 8 (.1.2) Potri.001G246900 [exp] 272 / 2e-86 AT5G62700 858 / 0.0 tubulin beta chain 3 (.1) Potri.003G126800 [exp] 272 / 2e-86 AT5G12250 815 / 0.0 beta-6 tubulin (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007851 [exp] 933 / 0 AT3G61650 938 / 0.0 gamma-tubulin (.1) Lus10010986 [exp] 847 / 0 AT3G61650 851 / 0.0 gamma-tubulin (.1) Lus10035497 [exp] 276 / 9e-88 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10002000 [exp] 276 / 1e-87 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10027476 [exp] 276 / 1e-87 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10039231 [exp] 276 / 1e-87 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10040712 [exp] 274 / 6e-87 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10016448 [exp] 274 / 6e-87 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10008528 [exp] 272 / 3e-86 AT5G12250 837 / 0.0 beta-6 tubulin (.1) Lus10023348 [exp] 271 / 3e-86 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF03953 [poplar] [flax] Tubulin_C Tubulin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G094900.2 pacid=42764540 polypeptide=Potri.014G094900.2.p locus=Potri.014G094900 ID=Potri.014G094900.2.v4.1 annot-version=v4.1 ATGCCGAGAGAGATAATCACGCTGCAAGTAGGACAATGCGGGAACCAGATCGGCATGGAGTTCTGGAAACAGCTTTGCCTCGAACACGGCATCAACAAAG ATGGCATTCTCGAAGATTTCGCTACTCAGGGAGGTGATAGGAAAGATGTGTTTTTCTACCAAGCGGATGACCAGCACTACATACCACGAGCATTACTAAT TGATTTGGAGCCTAGGGTCATCAATGGAATTCAAAACAGTGAATATCGAAATCTTTACAATCATGAGAACATCTTTGTTTCGGATCATGGTGGTGGTGCA GGAAATAATTGGGCCAGTGGATATCATCAGGGAAAGGGTGTTGAAGAGGATATAATGGACATGATTGATAGAGAGGCAGATGGAAGTGATAGTCTTGAGG GTTTTGTTCTATGCCATTCAATTGCTGGAGGAACAGGCTCAGGTATGGGCTCGTATCTGCTGGAGACTTTAAATGATCGCTATAGCAAAAAGCTGGTCCA GACATACAGTGTATTTCCTAACCAGATGGAGACGAGTGATGTGGTAGTCCAACCCTATAACTCACTTTTAACACTCAAGAGACTGACACTAAATGCAGAT TGTGTTGTTGTTCTGGACAATACTGCACTGAATAGAATTGCTGTTGAGCGCCTACATTTGTCAACTCCCACATTTGCTCAAACAAACTCTTTGGTATCTA CTGTTATGTCTGCTAGCACAACTACTCTGCGGTATCCAGGATATATGAACAATGACTTGGTTGGTCTTCTTGCATCTTTAATTCCAACACCAAGATGCCA TTTTCTCATGACTGGATATACACCACTCACAGTGGAGCGTCAGGCTAACGTGATTCGTAAAACTACTGTACTGGATGTTATGAGAAGACTTCTGCAGACC AAGAATATCATGGTTTCCTCTTATGCACGAACAAAAGAAGCTAGTCAAGCAAAATACATTTCGATATTGAATATTATTCAGGGAGAAGTGGACCCTACTC AGGTTCATGAAAGTTTGCAGAGGATTCGTGAAAGGAAGCTTGTTAACTTTATTGAGTGGGGCCCTGCAAGTATACAGGTTGCTTTGTCTAGAAAGTCTCC TTATGTTCAAACTGCGCACAGGGTAAGTGGGCTCATGCTAGCAAGCCACACTAGCATCCGCCACCTCTTCAGCAAATGTTTGAGCCAGTATGAGAAGCTG AGAAAAAAACAAGCTTTTCTTGATAACTATCGAAAATTTCCGATGTTTGCTGACAATGATCTTTCTGAATTTGATGAATCACGGGACATAATTGAGAGTT TAGTTGATGAATACAAAGCCTGTGAGTCCCCAGATTACATAAAATGGGGAATGGAGGATCCGGACAACCTTTTAACAGAAGAAGGTAATGCTAAAGGAAC AGTGGATCCAAAATTGGCAATTTGA
AA sequence Show only first row Show all	>Potri.014G094900.2 pacid=42764540 polypeptide=Potri.014G094900.2.p locus=Potri.014G094900 ID=Potri.014G094900.2.v4.1 annot-version=v4.1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGINKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGA GNNWASGYHQGKGVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNAD CVVVLDNTALNRIAVERLHLSTPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQT KNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKL RKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYKACESPDYIKWGMEDPDNLLTEEGNAKGTVDPKLAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61650		TUBG1	gamma-tubulin (.1)		Potri.014G094900 [exp]	0	1	Pt-TUBG1.1,TUBG1
AT1G73430			sec34-like family protein (.1....		Potri.010G138900 [exp]	8.00	0.8644
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.013G117200 [exp]	8.06	0.8257	Pt-SERK2.2
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079300 [exp]	12.80	0.8545	CAS.3
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.010G070600 [exp]	20.00	0.7987
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252000 [exp]	20.97	0.8446
AT4G28760			Protein of unknown function (D...		Potri.002G253600 [exp]	24.49	0.7958
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.011G052800 [exp]	27.38	0.8293	Pt-NSF.2
AT5G25530			DNAJ heat shock family protein...		Potri.006G246700 [exp]	29.93	0.8026
AT2G40070			unknown protein		Potri.008G066900 [exp]	32.17	0.8223
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.014G067400 [exp]	32.61	0.8310	Pt-TTN1.1

Compare expression of checked genes

Potri.014G094900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.