Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64300 749 / 0 Protein kinase family protein (.1.2) AT5G41730 746 / 0 Protein kinase family protein (.1) AT1G01450 520 / 6e-180 Protein kinase superfamily protein (.1) AT1G14000 114 / 8e-27 VIK VH1-interacting kinase (.1) AT3G46930 111 / 7e-26 Protein kinase superfamily protein (.1) AT1G62400 108 / 1e-25 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G58950 108 / 9e-25 Protein kinase superfamily protein (.1) AT5G01850 105 / 2e-24 Protein kinase superfamily protein (.1) AT5G57610 107 / 1e-23 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G17700 102 / 1e-22 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137000 [exp] 742 / 0 AT1G64300 781 / 0.0 Protein kinase family protein (.1.2) Potri.010G164500 [exp] 120 / 7e-29 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.007G060600 [exp] 115 / 1e-26 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.008G090800 [exp] 112 / 2e-26 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.006G170700 [exp] 115 / 3e-26 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.004G179100 [exp] 111 / 8e-26 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 108 / 3e-25 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 110 / 5e-25 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.015G075200 [exp] 107 / 5e-25 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041114 [exp] 744 / 0 AT1G64300 600 / 0.0 Protein kinase family protein (.1.2) Lus10033941 [exp] 739 / 0 AT1G64300 796 / 0.0 Protein kinase family protein (.1.2) Lus10036439 [exp] 739 / 0 AT1G64300 599 / 0.0 Protein kinase family protein (.1.2) Lus10032357 [exp] 540 / 0 AT1G64300 581 / 0.0 Protein kinase family protein (.1.2) Lus10041113 [exp] 240 / 1e-73 AT1G01450 187 / 8e-56 Protein kinase superfamily protein (.1) Lus10032356 [exp] 233 / 2e-72 AT1G64300 268 / 4e-86 Protein kinase family protein (.1.2) Lus10023989 [exp] 114 / 3e-26 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 115 / 5e-26 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10030435 [exp] 112 / 5e-26 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10026626 [exp] 111 / 5e-26 AT1G14000 748 / 0.0 VH1-interacting kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06760 [poplar] [flax] DUF1221 Protein of unknown function (DUF1221) CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.014G095200.3 pacid=42762269 polypeptide=Potri.014G095200.3.p locus=Potri.014G095200 ID=Potri.014G095200.3.v4.1 annot-version=v4.1 ATGGAGCAGTTTAGGCAGATTGGAGAGGTACTCGGAAGTCTGAAGGCATTGATGGTGTTTCGCGACAATATACAAATCAATCCACGACAATGCTGTCTGT TGCTTGATGTATTCAGTTTTGCATATGATTCAATAGCTGAAGAGATGAGACAAAACCTGAAATTTGAAGAGAAGAACGAGAAATGGAGAATTCTTGAACA GCCATTGAGAGAGATTTATAGAATATTCAAAGAAGGAGAAGGTTACATCAAGCAGTGCCTGGAAACCAAGGATTGGTGGGCCAAAGCCATTACCCTCTAT CAGAACTCGTATTGCGTTGAGTTTTACATCCATAACTTATTATCATGTATCCCTGTTGTCATTGAATCAATCGAAATTGCTGGAGAATTTTCTGGATTAG ATCAGGATGAGATACAGAAGAAGAGACTTGTGTACTCGAACAAATATCAGAAGGAATGGAAAGATCCCCGACTTTTCCAGTGGAAGTTTGCAAAGCAGTA TCTTATTTCTCAGGAACTTTGCAATCGGTATAATACAGTTTGGAAAGAAGATAGGTGGGTGCTCCTAAACAAAATCCTGGAAAAGAAGATGTCAGGCTCG ACAAAGCAAGAGCGGCAACTTACAGATATTCTATTGAAAAACTTGGAAGGATCGGAGCCAGTAAATGGGAAACTCTTACCATGTTCAATCTTAGTACGGT CCAAGGACTACAGTGTAAGGAGACGCCTTGGGAGTGGGAGTCAGTACAAGGAGATACTATGGCTGGGTGAAAGCCTTGCCCTGAGACACTTTTTTGGAGA CATTGAGCCCCTATTTCCCGAGATTTCTTCATTGTTATCCCTTTCCCACCCGAATATATTGCAATTCTTTTGTGGGTTCACTGACGAGGAAAAGAAAGAG TGTTTTCTAGTCATGGAACTAATGACTAGGGACCTCTGCAGCTGCATCAGAGAAACCTGTGGCCCAAGAAAGCGCATTCCATTCTCTCTTCCCATTGCGG TTGATCTTATGCTTCAAATTTCCAGAGGAATGGAATATCTCCACTCAAAGGAAATCTACCATGGTAATTTGAACCCTTCTAACATTCTTGTTAAACCAAG AAACATCACCTCAGAAGGGTACCTGCACGCTAAGGTTTCGGGTTTCGGGCTCTCTTCAATCAAGAACTTCACTCCAAAAAACTCATCAAACCAGAACGAA ACCCTCTCGTTCATCTGGTATGCTCCAGAAATTTTGGAAGAGAAAGAACAGACAGGAAGTGAAAAGAATTCTAAATACACAGAAAAAGCTGATGTCTACA GTTTTGGAATGGTTTGCTTTCAACTTTTGACTGGGAAAGTTCCATTTGAGGATAGCCATCTTCAAGGGGACAACATGAGCCGAAACATCCTAGCTGGAGA GAGGCCTCTATTTCCATTTTATTCACCAAAATATGTTACTAACTTGACAAAGAGATGTTGGCATACGGACCCAAATCAACGTCCAAGCTTCTCATCCATA TGTAGGATCCTTCGCTATGTAAAACGTTTCCTTATTATGAACCCTGATTATAACAGAGAACCAGAGCCGCCAATGCCAGTGATAGACTACGGAGACATGG AGACGAAGCTTTTAAGGAAATTCCCTTCTTGGGATACAGCAGAATCATCAATGGTAGCACAAATTCCATTTCAAATGTTTGTTTACAGAGTTGTTGAAAA AGAGAAAGCAAGAACAACTCAGAAAGAAACTTCAGAATCAGGGAGCGATAAAGCCTCATTTAGTGGGGACGAAAATTCTGCCATCCTAGATGATCCATGC CCATCCCCTTCCTGCCCATCTCCTACTGAAAGAAGGTTGTCAATAGCTGAAACTATGCCCAGAAGACCTTCAATATCGAAGAGATTGTCAGATGTGAAAA CCATCAAACAATCAGGAACACCAAAAGGCCGTTCAAGACCTCCCCAACTGCAGTGCACGCGTAGTTTAAGGACAGGTTCAGAAAGCCAGTTGATGATGAT CAGTCCAAGACCCAGAAGAACATCTTCTGGTCATGCATCAGATTCAGAGATCTCCTAG
AA sequence Show only first row Show all	>Potri.014G095200.3 pacid=42762269 polypeptide=Potri.014G095200.3.p locus=Potri.014G095200 ID=Potri.014G095200.3.v4.1 annot-version=v4.1 MEQFRQIGEVLGSLKALMVFRDNIQINPRQCCLLLDVFSFAYDSIAEEMRQNLKFEEKNEKWRILEQPLREIYRIFKEGEGYIKQCLETKDWWAKAITLY QNSYCVEFYIHNLLSCIPVVIESIEIAGEFSGLDQDEIQKKRLVYSNKYQKEWKDPRLFQWKFAKQYLISQELCNRYNTVWKEDRWVLLNKILEKKMSGS TKQERQLTDILLKNLEGSEPVNGKLLPCSILVRSKDYSVRRRLGSGSQYKEILWLGESLALRHFFGDIEPLFPEISSLLSLSHPNILQFFCGFTDEEKKE CFLVMELMTRDLCSCIRETCGPRKRIPFSLPIAVDLMLQISRGMEYLHSKEIYHGNLNPSNILVKPRNITSEGYLHAKVSGFGLSSIKNFTPKNSSNQNE TLSFIWYAPEILEEKEQTGSEKNSKYTEKADVYSFGMVCFQLLTGKVPFEDSHLQGDNMSRNILAGERPLFPFYSPKYVTNLTKRCWHTDPNQRPSFSSI CRILRYVKRFLIMNPDYNREPEPPMPVIDYGDMETKLLRKFPSWDTAESSMVAQIPFQMFVYRVVEKEKARTTQKETSESGSDKASFSGDENSAILDDPC PSPSCPSPTERRLSIAETMPRRPSISKRLSDVKTIKQSGTPKGRSRPPQLQCTRSLRTGSESQLMMISPRPRRTSSGHASDSEIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64300			Protein kinase family protein ...		Potri.014G095200 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152080 [exp]	3.46	0.9674
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.004G139700 [exp]	4.35	0.9291	FLS4,Pt-FLS.4
AT2G30300			Major facilitator superfamily ...		Potri.013G154000 [exp]	4.47	0.9629
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007600 [exp]	7.93	0.9497
					Potri.004G156500 [exp]	8.48	0.9540
AT1G45474		LHCA5	photosystem I light harvesting...		Potri.014G029700 [exp]	9.74	0.9565	2,Pt-LHCA5.2
AT3G61930			unknown protein		Potri.014G105000 [exp]	10.19	0.9410
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G011302 [exp]	10.58	0.9337
AT3G62820			Plant invertase/pectin methyle...		Potri.014G129400 [exp]	10.67	0.9551
AT2G17080			Arabidopsis protein of unknown...		Potri.002G012466 [exp]	14.49	0.9358

Compare expression of checked genes

Potri.014G095200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.