Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SPA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46340 846 / 0 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT4G11110 733 / 0 SPA2 SPA1-related 2 (.1) AT1G53090 541 / 2e-178 SPA4 SPA1-related 4 (.1.2) AT3G15354 516 / 1e-168 SPA3 SPA1-related 3 (.1) AT2G32950 341 / 3e-104 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 158 / 7e-42 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23730 157 / 7e-42 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT2G47990 74 / 2e-13 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) AT2G21390 71 / 6e-12 Coatomer, alpha subunit (.1) AT1G62020 69 / 1e-11 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G094500 [exp] 839 / 0 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.003G137100 [exp] 826 / 0 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.001G399600 [exp] 535 / 7e-175 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.011G119500 [exp] 523 / 3e-170 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.014G159300 [exp] 354 / 5e-109 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 342 / 6e-105 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 332 / 3e-103 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G140200 [exp] 179 / 5e-49 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G143200 [exp] 161 / 5e-43 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032358 [exp] 603 / 0 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10019475 [exp] 480 / 1e-154 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10043323 [exp] 470 / 3e-151 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10033942 [exp] 449 / 2e-141 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10029990 [exp] 354 / 9e-109 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 353 / 1e-108 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10019476 [exp] 200 / 3e-54 AT3G15354 624 / 0.0 SPA1-related 3 (.1) Lus10027454 [exp] 137 / 6e-36 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005742 [exp] 108 / 1e-25 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027848 [exp] 70 / 3e-12 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.014G095300.8 pacid=42763812 polypeptide=Potri.014G095300.8.p locus=Potri.014G095300 ID=Potri.014G095300.8.v4.1 annot-version=v4.1 ATGGACCAAGTTGCAGAGGAGCTGGTTGCAAATGATGTACATGGGAATGCAGACCTTCAAGCAAAAGGCTATGATCCCTTGACGCTAGAACCTCGCAATG CTTTGGGATCACCAATAATGTGTGCATCCACGAGGAGTGATTGGGCGGAGAGCTCCACCACTGATTATATGGATACAAGCAGAATGGAGGAAAAGGACTT AAGTAGAAGTGCAATAACTTTGGCGGAAGCTGAACCCCCTTGCAGTATCCCTTGCTCTGTGAAGGATAGTGGGCATGTGGTTGAAAAATTGACAGTGGGA AACTATTGGACTTCACATCAAGCTTTAGGTCGAAGCCTAGACAGTAACAGGCAACACAGATGGCAAAATATATATCAATTCGTAAATGGATCAAGAGATA AGGCTTCACATGGTGATTATGTGCACGAAGACAAGGAAAAACTGCTATCAAGAGCTGGAAAGCAGTTGATGAAAATGCGTTCTGACCTGTGGAGTGGCTT GAAACCTTTGTCGACGAAGCATTTTGGTCATGACAGCAAAGCAATTTCTACACATTCGAGGGCTAGTGACAAGAGGGTTGTATCAAGCATTATACTGCCC AATGGGGATGCTTCCTTGAAGACCTCATCCATGCCTGGCTTTTCTCAGCCACCGCTGAAGAAAGTCTTTAAAGGAAAGGGCGTTCTCTGCAGAAACCAAG AAGCTCTCCCTGAATGTGGGGGTGCAGATGCTGGCCCTACTGATGGAAAACTGGATTATGCAAGGAAAGTTGCTTCTGATGCACTAGTGAGATCAAGTTC CAATAACGATAAGAATAGGGTTGATAGGTCTTGTCCTGAATCCTTACATGAAGGGATCAGTTTGAGAGAGTGGCTGAAACCTGGGCATTGTAGAAGAGAT AAAGTTGAAAGCCTGCTGATATTTAAGCAAACTGTGGAGTTGGTGGATTTAGCACACTCTCAAGGAGTTGCCTTTCAAGACTTACGTCCATCCTGTTTTA ATTTATTGCCATCAAATCGGGTCATTTACATTGGTTCTTCTACCAAGACAGAACAAGGGGTTCCTATACCCTGTGCTTTTGTTAAGAAAAGGCCACTGGA GCAAGTTGCGGGTTCCTATTGTAGTTTAGTTCCAAAGAAGCAAAGACTGGGTGAAGAAACAAAATCACTTCAACAGCAGTCTCGGTATAGCTCTAGTTCT GGGTTTGGGACAAAGCCAATGGATGGAAATAATATTCATGAAACTGGTGCACAAGACTCTAGATTTGTGGAACTTCAGTCTCAGAAGCATTCTAATTACC AAAGTTCATGTATGGAAACAAGGCAACTGTCTTTTTCTTTAACTTTACAATCGGAAGAAAAATGGTATAGAAGTCCAGAACTGCTGAATGGAGGACCTAT CACCTTTTCATCAAATATCTATAACCTAGGGGTCCTGCTTTTTGAGTTGCTCAGCAGGTTCGAGTCATTTGAGGAAAATTCTGCGGTGATGCTGGATTTG CGTGATCGGATTCTACCACCAAGTTTTCTTTCAGAAAATCCAAGGGAAGCTGGCTTTTGTCTTTGGCTTCTTCATCCTGAACCTTCGTCTCGTCCAACAG CTAGGGAAATCCTGCAGTCTGAATTACTATGTCGATCCGGGGAACTGTCTTCCGGGAACAATGTATCAACAACTCCTGACAATGATGATACTGAACCGGG GCTGTTGCATCATTTTCTAAGCTTATTGAAAGAACAAAAGCAGAAACATGAGGCAAAGTTGCTTGTAGATATTGAATGCTTAGAAGAAGATATCAAAGAG GTTGAGAAAAGGCATTTATTGAGAACACCCAAAATTGTTTCTGAGACACAAGAGAGATGCCTCGATTCAAGAGAACAGGACCTGTATCCTGGTTCGGTTG CTATTTCTAGTTCGTTTTCAGTATCAAAGAAGAATGAGGCAAGGTTGAGCAGAAATATTAACCAAATCAAGAATGCCTACTTCTCCATGAGATCTCAAAT CCGCCATACTTCTTCTGCCCCTCCCTCTGATAAAGACTTGCTCAAGAACCGAGATAGTTTGCCTGCAGTTCAGTATAACAGAGAGGACTCAAACACAAAT CAGAGATCAGATGATCCCCTTGGAGCCTTTTTTGAAGGTCTCTGCAAGTTTGCTAGTTATAGCAGGTTTGAGGTGTGTGGATCACTCAAAAATGGAGATT TTATGAGCTCCACAAATGTAGTTTGTACTTTGAGTTTTGATCGTGACGAGGATTATATTGCTGCTGCTGGCGTATCAAAGAAAATCAAGGTTTTTGAGTT TGGTGCACTTTTAAATGACTCCATAGATATCCATTATCCCACGGTTGAGATGTCAAACAAATCTAAGATCAGTTCTGTATGCTGGAACAATTACATCAAG AACTATTTGGCTTCAACTGACTATGATGGTGTGGTTCAGATGTGGGATGCAGGCACTGGTCAAATATTCTCCCAATACACAGAGCACCAAAAGAGGGCTT GGTCTGTAGACTTCTCTCTGGCTGATCCTATGATGTTTGCGAGTGGCAGTGATGACTGTTCTGTGAAATTATGGAGCATTAATGAGAGAAGTTCTTTTGG TACCATTGGGAACCCTGCCAACGTCTGCTGTGTTCAGTTCTCTCCCTCCTCTACTAATTTATTGGTTTTTGGATCTGCTGACTATAAGGTCTACTGCTAT GATCTTCGGCATACTAAGATCCCTTGGTGCACATTAGCTGGCCATGGAAAAACTGTTAGCTATGTGAAATTTTTAGATTCAGAGACCCTTGTTTCTGCAT CCACAGACAATACTCTGAAGCTTTGGGATCTCAACAAAACTAGCTCTACTGGCGTGTCCTCTAGTGCTTGCAGTTTGACCTTTGGTGGTCACACTAACGA AAAGAATTTTGTAGGTTTGTCTGCACTGGATGGATACATAGCATGCGGTTCAGAAACCAACGAGGTTTATTGTTATTATAGATCTCTGCCAATGCCAATT ACTTCTCACAAATTTGGATGTGTTGATCCTGTCTCTGGAAACGAGATTGTTGATGGTGGTGGACAATTTGTTTCAAGTGTGTGTTGGCGACGGAAATCGA ATATGGTTGTTGCCGCCAACTCAAGTGGAAATATGAAGGTGTTACGGATGGTGTGA
AA sequence Show only first row Show all	>Potri.014G095300.8 pacid=42763812 polypeptide=Potri.014G095300.8.p locus=Potri.014G095300 ID=Potri.014G095300.8.v4.1 annot-version=v4.1 MDQVAEELVANDVHGNADLQAKGYDPLTLEPRNALGSPIMCASTRSDWAESSTTDYMDTSRMEEKDLSRSAITLAEAEPPCSIPCSVKDSGHVVEKLTVG NYWTSHQALGRSLDSNRQHRWQNIYQFVNGSRDKASHGDYVHEDKEKLLSRAGKQLMKMRSDLWSGLKPLSTKHFGHDSKAISTHSRASDKRVVSSIILP NGDASLKTSSMPGFSQPPLKKVFKGKGVLCRNQEALPECGGADAGPTDGKLDYARKVASDALVRSSSNNDKNRVDRSCPESLHEGISLREWLKPGHCRRD KVESLLIFKQTVELVDLAHSQGVAFQDLRPSCFNLLPSNRVIYIGSSTKTEQGVPIPCAFVKKRPLEQVAGSYCSLVPKKQRLGEETKSLQQQSRYSSSS GFGTKPMDGNNIHETGAQDSRFVELQSQKHSNYQSSCMETRQLSFSLTLQSEEKWYRSPELLNGGPITFSSNIYNLGVLLFELLSRFESFEENSAVMLDL RDRILPPSFLSENPREAGFCLWLLHPEPSSRPTAREILQSELLCRSGELSSGNNVSTTPDNDDTEPGLLHHFLSLLKEQKQKHEAKLLVDIECLEEDIKE VEKRHLLRTPKIVSETQERCLDSREQDLYPGSVAISSSFSVSKKNEARLSRNINQIKNAYFSMRSQIRHTSSAPPSDKDLLKNRDSLPAVQYNREDSNTN QRSDDPLGAFFEGLCKFASYSRFEVCGSLKNGDFMSSTNVVCTLSFDRDEDYIAAAGVSKKIKVFEFGALLNDSIDIHYPTVEMSNKSKISSVCWNNYIK NYLASTDYDGVVQMWDAGTGQIFSQYTEHQKRAWSVDFSLADPMMFASGSDDCSVKLWSINERSSFGTIGNPANVCCVQFSPSSTNLLVFGSADYKVYCY DLRHTKIPWCTLAGHGKTVSYVKFLDSETLVSASTDNTLKLWDLNKTSSTGVSSSACSLTFGGHTNEKNFVGLSALDGYIACGSETNEVYCYYRSLPMPI TSHKFGCVDPVSGNEIVDGGGQFVSSVCWRRKSNMVVAANSSGNMKVLRMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46340		SPA1	SUPPRESSOR OF PHYA-105 1, SPA ...		Potri.014G095300 [exp]	0	1	SPA1.1
AT3G15354		SPA3	SPA1-related 3 (.1)		Potri.011G119500 [exp]	2.82	0.9388	SPA3.2
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	5.19	0.9008
AT5G64460			Phosphoglycerate mutase family...		Potri.009G080300 [exp]	5.91	0.9076
AT4G31850		PGR3	proton gradient regulation 3 (...		Potri.006G264800 [exp]	8.71	0.9245
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.017G050500 [exp]	8.94	0.9004
AT2G38330			MATE efflux family protein (.1...		Potri.016G126000 [exp]	15.00	0.9135
AT1G73980			Phosphoribulokinase / Uridine ...		Potri.015G055400 [exp]	15.19	0.8708
AT2G43010	bHLH	SRL2, PIF4, AtP...	phytochrome interacting factor...		Potri.002G055400 [exp]	20.27	0.8541
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.013G075400 [exp]	22.97	0.9214
AT4G14605			Mitochondrial transcription te...		Potri.017G067600 [exp]	24.53	0.8972

Compare expression of checked genes

Potri.014G095300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.