Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46370 790 / 0 FIN219, JAR1 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) AT4G03400 545 / 0 GH3-10, DFL2 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) AT4G27260 395 / 1e-130 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT2G23170 385 / 4e-127 GH3.3 Auxin-responsive GH3 family protein (.1) AT5G54510 385 / 1e-126 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT4G37390 383 / 5e-126 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT1G23160 382 / 8e-126 Auxin-responsive GH3 family protein (.1) AT1G48660 377 / 6e-124 Auxin-responsive GH3 family protein (.1) AT1G59500 377 / 9e-124 GH3.4 Auxin-responsive GH3 family protein (.1) AT2G14960 375 / 2e-123 GH3.1 Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G168200 [exp] 1051 / 0 AT2G46370 788 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Potri.019G103500 [exp] 565 / 0 AT4G03400 897 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.013G144300 [exp] 561 / 0 AT4G03400 852 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 395 / 1e-130 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 393 / 5e-130 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 392 / 9e-130 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 390 / 8e-129 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 390 / 1e-128 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.002G206400 [exp] 375 / 4e-123 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003039 [exp] 881 / 0 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10005151 [exp] 878 / 0 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10039797 [exp] 526 / 0 AT4G03400 769 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 381 / 2e-125 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 381 / 3e-125 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 379 / 3e-124 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018565 [exp] 377 / 1e-123 AT4G03400 495 / 1e-169 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 375 / 2e-122 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 367 / 1e-119 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 362 / 9e-118 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF03321 [poplar] [flax] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Potri.014G095500.1 pacid=42764066 polypeptide=Potri.014G095500.1.p locus=Potri.014G095500 ID=Potri.014G095500.1.v4.1 annot-version=v4.1 ATGTTAGAGAAGAAGATGGAAGGAATTAACACCGATAAAGTGATAGAGGAATTTGAAGCATTGACTGAAGATGCTGGAATGGTTCAGAGAGAAACCCTGA AGAAAATATTGGAAGAGAATGGATCTGCCGAGTATTTGCTGAATTCGGGTCTTAATGGAAGGACTGACCCTGAGAGTTTCAAGTCTTGTGTTCCACTTGT TACTCACAAAGACTTGGAAGCTTATATTTACAGAATTGCTGATGGCGATCCTTCTCCTATCCTCACTGGGAAACCCATACCAGACATGTCTTTGAGTTCT GGTACTACTCAGGGGAGGAGAAAGCTTGTCCCTTTCAATGATGAATTGATGGAAAACACCTTGCAGATATATAGAACTTCTTTTGCCTTCAGAAACAGAG AATTTCCACTGGAGAAGGGGAAATCCTTACAGTTTGTCTACAGCAGCAAGCCATGGAAAACAAAAGGGGGTTTAGGTGCAGGAACTGCCACAACAAATAT CTTCCGCAATTCGAAATACAAAAATGGAATGAAGGCAATTCAGTTCCAATGCTGCAGCCCTGATGAAGTGATATTTGGTCCTGATTTCCACCAATCATTA TACTGCCATCTCTTATGCGGGCTACTCTTCCGCGAAGAAATTCAGTTTGTGTTCTCTACATTTGCTCATAGCATTTTGCTTGCATTCCGGACCTTTGAAC AAGTCTGGGAGGAGCTCTGCAATGATATACGTGACGGGGAACTAAGCAGCAGAGTCACCGCCCCTTCAGTTAGAATAGCAATGTCAAAACTGCTTAAGCC AAGCCCTGAATTGGCCGATTTGATCTATAAAAAATGCTCTGGATTGAGTAATTGGTATGGATTAATACCAGAGCTTTTCCCCAACGCTAAGTACATCTAC GGGATAATGACCGGGTCAATGGAGCCTTATTTGAAGAAACTGAGGCACTATGCAGGGGAGCTGCCATTGATGAGTGCTGATTATGGTTCTTCAGAAGGGT GGGTTGCAGCGAATGTCAATCCAAAATTGCCTCCTGAGTTAGCAACTTTTGCCGTGCTTCCTAATATTGGATACTTCGAATTCATTCCTCTTAATAACAA CGCTGAGTGCCTGTATATGGAGCCCAAGCCTGTGGGTCTGACGGAAGTCAAGATTGGGGAAGATTATGAGATCATTGTCACCACTTTTGCAGGTTTGTAC AGGTACAGGCTAGGAGATGTGGTGAGGGTTATGGGTTTCCATAACACAACCCCAGAACTTAAATTTGTGTGCAGGAGGAACCTTGTTCTTTCCATAAACA TTGACAAGAACACTGAGAAGGATTTGCAGCTATCTGTAGAAGAAGCTGGCAAACTGCTAGCCGAAGAAAAGCTTGAGATAGTTGACTTCAGCAGTCTGGT TGATGTATCCACAGACCCTGGACACTACGTTATCTTTTTAGAAATTAGTGGTGAACCAAGTGAGGAGGTGTTAAGGGAGTGTTGCAATTGCCTGGATCGA TCCTTTGTTGATCCAGGCTATGTTGGTTCACGGAAGGTGAAGGCCATTGGACCCCTTGAGCTCCGAGTTGTTTGGAGAGGAACCTTCCAGAAGATTTTGG AGCATTACCTAGGATTAGGAACTGTTGTCAGCCAGTTTAAAACCCCTCGTTGTGTTGGGCCCATGAACAGCAAGGTGCAGCAAATCCTGTGTAATAATGT TGCTAAGACCTATTTTAGTACTGCCTTCTGA
AA sequence Show only first row Show all	>Potri.014G095500.1 pacid=42764066 polypeptide=Potri.014G095500.1.p locus=Potri.014G095500 ID=Potri.014G095500.1.v4.1 annot-version=v4.1 MLEKKMEGINTDKVIEEFEALTEDAGMVQRETLKKILEENGSAEYLLNSGLNGRTDPESFKSCVPLVTHKDLEAYIYRIADGDPSPILTGKPIPDMSLSS GTTQGRRKLVPFNDELMENTLQIYRTSFAFRNREFPLEKGKSLQFVYSSKPWKTKGGLGAGTATTNIFRNSKYKNGMKAIQFQCCSPDEVIFGPDFHQSL YCHLLCGLLFREEIQFVFSTFAHSILLAFRTFEQVWEELCNDIRDGELSSRVTAPSVRIAMSKLLKPSPELADLIYKKCSGLSNWYGLIPELFPNAKYIY GIMTGSMEPYLKKLRHYAGELPLMSADYGSSEGWVAANVNPKLPPELATFAVLPNIGYFEFIPLNNNAECLYMEPKPVGLTEVKIGEDYEIIVTTFAGLY RYRLGDVVRVMGFHNTTPELKFVCRRNLVLSINIDKNTEKDLQLSVEEAGKLLAEEKLEIVDFSSLVDVSTDPGHYVIFLEISGEPSEEVLRECCNCLDR SFVDPGYVGSRKVKAIGPLELRVVWRGTFQKILEHYLGLGTVVSQFKTPRCVGPMNSKVQQILCNNVAKTYFSTAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Potri.014G095500 [exp]	0	1
AT2G41480			Peroxidase superfamily protein...		Potri.016G125000 [exp]	2.44	0.8254
AT3G57630			exostosin family protein (.1.2...		Potri.006G054800 [exp]	2.82	0.8206
AT3G48880			RNI-like superfamily protein (...		Potri.001G373900 [exp]	6.92	0.8165
AT3G56200			Transmembrane amino acid trans...		Potri.010G181800 [exp]	9.21	0.7841
AT5G64250			Aldolase-type TIM barrel famil...		Potri.017G051800 [exp]	12.00	0.7484
AT5G04590		SIR	sulfite reductase (.1)		Potri.001G257000 [exp]	14.00	0.7286	Pt-SIR.2
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Potri.002G129166 [exp]	15.16	0.7627
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.006G214700 [exp]	19.13	0.7787
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Potri.006G103900 [exp]	23.51	0.7727
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.016G049600 [exp]	24.73	0.7641	PGIP.2

Compare expression of checked genes

Potri.014G095500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.