Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61670 559 / 0 Protein of unknown function (DUF3133) (.1) AT2G46380 481 / 1e-157 Protein of unknown function (DUF3133) (.1) AT4G01090 365 / 6e-114 Protein of unknown function (DUF3133) (.1) AT1G01440 361 / 7e-113 Protein of unknown function (DUF3133) (.1) AT5G05190 64 / 4e-10 Protein of unknown function (DUF3133) (.1) AT4G34390 55 / 2e-07 XLG2 extra-large GTP-binding protein 2 (.1) AT3G56410 55 / 3e-07 Protein of unknown function (DUF3133) (.1), Protein of unknown function (DUF3133) (.2) AT2G23460 54 / 4e-07 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT1G31930 49 / 1e-05 XLG3 extra-large GTP-binding protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G137700 [exp] 634 / 0 AT3G61670 335 / 1e-101 Protein of unknown function (DUF3133) (.1) Potri.001G093900 [exp] 620 / 0 AT3G61670 370 / 2e-114 Protein of unknown function (DUF3133) (.1) Potri.019G061400 [exp] 67 / 6e-11 AT5G05190 107 / 2e-23 Protein of unknown function (DUF3133) (.1) Potri.005G131200 [exp] 55 / 2e-07 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.007G035200 [exp] 50 / 5e-06 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.012G042500 [exp] 48 / 4e-05 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 48 / 4e-05 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 47 / 8e-05 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 47 / 8e-05 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005153 [exp] 927 / 0 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1) Lus10003040 [exp] 885 / 0 AT3G61670 484 / 1e-158 Protein of unknown function (DUF3133) (.1) Lus10003905 [exp] 278 / 5e-81 AT2G46380 271 / 8e-80 Protein of unknown function (DUF3133) (.1) Lus10001910 [exp] 231 / 1e-64 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1) Lus10012863 [exp] 64 / 6e-10 AT5G05190 110 / 9e-25 Protein of unknown function (DUF3133) (.1) Lus10029013 [exp] 62 / 9e-10 AT5G05190 64 / 6e-11 Protein of unknown function (DUF3133) (.1) Lus10030508 [exp] 62 / 2e-09 AT5G05190 114 / 4e-26 Protein of unknown function (DUF3133) (.1) Lus10034250 [exp] 60 / 4e-09 AT5G05190 68 / 4e-12 Protein of unknown function (DUF3133) (.1) Lus10023838 [exp] 50 / 8e-06 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 50 / 1e-05 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF11331 [poplar] [flax] zinc_ribbon_12 Probable zinc-ribbon domain
Representative CDS sequence Show only first row Show all	>Potri.014G095700.1 pacid=42763795 polypeptide=Potri.014G095700.1.p locus=Potri.014G095700 ID=Potri.014G095700.1.v4.1 annot-version=v4.1 ATGGCGGAGTCAACGAAAGTGAGGTTGGTACGGTGCCCAAAATGTGAAAACCTTCTTCCAGAGCTTGCTGATTATTCTGTTTATCAGTGTGGTGGTTGTG GTGCTGTTCTTCGAGCTAAAAATAAGAATCGGGATACAGACACTTTATCATTGGAGAAATCGGATGAAGTTAGCGTAGCTGGAGTTGCTACCATCTCACC GAATTCTGTGGAAAATGTAGTTGAACTGAGTGATGCTTCTGATACAGATGTTAAGTCGAATGCTGGTTCTTTGAGGTGTGAAGAAAAGAATCACGAGAAG AACGATATGGACCGTGACGATATATCCCGGAATCCAGCTAAATCTGCTAGTGGAAAATGGGTCGTTGGAAATGGTCTTGAAGATGATAGGAATAGAGATG ATTGGGGTGATGCTGCGGGAAGAGAACCTGATGAGGTGAATTTGCAGATCAGATATACTAAAGGGTCTAGGAGATCTGGACAGATGTCGGGCAGGCAATG TGGGGATAGAGGTGAAATGGAGGGGTTTCAAAGAATCTTGAGATCTGAGGGTGAAGGCATGAGATCTTCAACTTCAAACTACCCGGATGAGGGCCCATCG AATTACAATTTTGATTCTTCTTATGGTTACGGTGATCAATTAAGGAATGTTGATGAGCAGAGTGGGCCTAGTAGAGTTCAGTACCTTGAAAAAGATCGAG CAGAGCTTCTCAGGAAGCTGGATGAGCTAAAAGAACAACTTAGCAGGTCCTGTGATGTGGCTGACAAACCCAACGAGAAGGTTCCTCTTAATGGGAGAAT GGCTCCTCCAGATTCTTATGGTGGTTCTGATAAATGGTTTGAAGGTAGTTCTTCAATGCCCAATAGGGCTTCAATGCAGTTCTTTGCACCTGATAGGCAT GCCACAGGGCCCTCTTATTTCAATCACCATTCTGAGTCTTTTGCTTATACTAATGGGCATGAAATGGCTATGAATAGCTTTCATCCCTCGGTGCACAAGT CAAATCTTATACCTGGATATGGGGATCCTTTTGGGCCCCAAATACTCAGGAGAACTCCACATAAGTTACCTGGTCAATACCAACAACCGCCTCGTCAATA TTTTTCTGGACAATACTTTGATACCAATCCTGATTTATTCGAGCCATATCCATCCAATGCAGCCTTTCACCAGCCTTCTTGTTCTTGTTTCCATTGCTAT GAGAAGCATCATGGAGTTTCAGCAACAGTTCCACCCACTTCTTTTGGCAATATAAGGTTCCCTGATATGTCAAACAATCCCATAATGTACCAGCACAGAA ACTCTGCGGCATTTGGCCCACACATGAATAATTCCAGGATTCCTGTTCCTTCTCAATTGAATTTCCGCAGTTCTCAATCCCACAAAAGATGGCCAAGTGA TCTCAACTCTGAAATGGCTGGTTTTGCTCGCCCTCATACTCGAAGAGTGGTCTTAGCCAGTGGTAGCAGATGTTGTCGTCCCATAGCTGGCGGCGCTCCA TTTTTAACATGTTTTAATTGCTTTGAACTGCTGCAACTTCCCAAGAAAGTACTACTTATGGCTAACAATCAACAAAAGATGCAGTGCAGCACCTGTTCCA GTGTGATCAATTTTTCTGTTGTAAACAAGAAACTCATGCTTTCTGTTAACACAGAAGCAACACAGATTCCTACAGAGGTTGATGACAGCTCCAGTGAGAT GATAAAAACCCACACTTCATATTCCCAAGACCACATTAACAGGATAAATGCAAATTTCTCTTCTGATGATTATGATAATTCTGGCTACGACTTCCAAACA GTAGAAACAGATCCAATAGGTCACCATTTGAACTCAACCAATCCTCAGGAGACACAAAGTTTCCACTCTTCATCTCCAAGTACATCTGAGTATGAAAATA TCCCAGACATTTTAATTGCACCCATCAATGGTACTCAGCAAGCCTCACTGTCTCCACCACCTCCTGGTTCACCTCTTCAGCAGCATTTTGATTACTCTTC TAATAATCATGCAGTGAATCGATTTGGGAAGGGAAACCGAAGCAATCGTGCAGATCACGAAAGGGTGATAACAAACAAGGCTAACACACGACAAAATTCT ATGAAAGAGGCTCCTGTGGCGACTGAGATGGAGGTGTCATTTCCTGATTATTCTAATACTGCAGCGTCCCAAGATTCAGGTGATGTGAGCAGAGAAGATA GTCAGTCAAGAAACAACAAGGGGGGTGATTCATTTTTTGCGAACATTATCAAGAAAAGCTTTAAGGATTTTTCCAGATCTCACCAGACAGACGAGCATGG TAGAAATAATGTCTTGGTTAATGGGCGTCACATACCAGATCGTTTGGTAAAGAAAGCTGAAAAACTAGCTGGACCGATCCATCCCGGACAGTATTGGTAT GATTACCGAGCTGGATTTTGGGGTGTTGTAGGCGGGCCATGTCTTGGCATAATTCCTCCATTTATTGAAGAATTAAATTATCCCATGCCAGAAAAGTGTG CTGGAGGGAATACTGGTATTTTTGTAAATGGAAGAGAGCTTCATCAGAAAGATTTTGATTTGCTGGCTAGTAGAGGACTGCCCACTGATAGAGACAGATC TTACATCGTTGAAATCTCTGGAAGAGTCCTGGATGAGGACACTGGAGAAGAGATGGATAGTCTTGGCAAACTTGCTCCAACAGTTGAGAAGGTAAAGCGT GGATTTGGCATGAAAGTTCCCAAAGCTGCTGTGCAATGA
AA sequence Show only first row Show all	>Potri.014G095700.1 pacid=42763795 polypeptide=Potri.014G095700.1.p locus=Potri.014G095700 ID=Potri.014G095700.1.v4.1 annot-version=v4.1 MAESTKVRLVRCPKCENLLPELADYSVYQCGGCGAVLRAKNKNRDTDTLSLEKSDEVSVAGVATISPNSVENVVELSDASDTDVKSNAGSLRCEEKNHEK NDMDRDDISRNPAKSASGKWVVGNGLEDDRNRDDWGDAAGREPDEVNLQIRYTKGSRRSGQMSGRQCGDRGEMEGFQRILRSEGEGMRSSTSNYPDEGPS NYNFDSSYGYGDQLRNVDEQSGPSRVQYLEKDRAELLRKLDELKEQLSRSCDVADKPNEKVPLNGRMAPPDSYGGSDKWFEGSSSMPNRASMQFFAPDRH ATGPSYFNHHSESFAYTNGHEMAMNSFHPSVHKSNLIPGYGDPFGPQILRRTPHKLPGQYQQPPRQYFSGQYFDTNPDLFEPYPSNAAFHQPSCSCFHCY EKHHGVSATVPPTSFGNIRFPDMSNNPIMYQHRNSAAFGPHMNNSRIPVPSQLNFRSSQSHKRWPSDLNSEMAGFARPHTRRVVLASGSRCCRPIAGGAP FLTCFNCFELLQLPKKVLLMANNQQKMQCSTCSSVINFSVVNKKLMLSVNTEATQIPTEVDDSSSEMIKTHTSYSQDHINRINANFSSDDYDNSGYDFQT VETDPIGHHLNSTNPQETQSFHSSSPSTSEYENIPDILIAPINGTQQASLSPPPPGSPLQQHFDYSSNNHAVNRFGKGNRSNRADHERVITNKANTRQNS MKEAPVATEMEVSFPDYSNTAASQDSGDVSREDSQSRNNKGGDSFFANIIKKSFKDFSRSHQTDEHGRNNVLVNGRHIPDRLVKKAEKLAGPIHPGQYWY DYRAGFWGVVGGPCLGIIPPFIEELNYPMPEKCAGGNTGIFVNGRELHQKDFDLLASRGLPTDRDRSYIVEISGRVLDEDTGEEMDSLGKLAPTVEKVKR GFGMKVPKAAVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61670			Protein of unknown function (D...		Potri.014G095700 [exp]	0	1
					Potri.019G023500 [exp]	2.64	0.8355
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335200 [exp]	3.46	0.8720
AT1G79190			ARM repeat superfamily protein...		Potri.007G067700 [exp]	6.16	0.8678
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	6.78	0.7993
AT5G65290			LMBR1-like membrane protein (....		Potri.005G072100 [exp]	8.24	0.7922
AT1G74160			unknown protein		Potri.012G061900 [exp]	12.16	0.7748
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.001G057800 [exp]	15.87	0.8004
AT5G27240			DNAJ heat shock N-terminal dom...		Potri.005G043200 [exp]	22.22	0.8020
AT2G35050			Protein kinase superfamily pro...		Potri.003G110000 [exp]	23.91	0.7977
AT1G48780			unknown protein		Potri.012G055300 [exp]	25.39	0.8637

Compare expression of checked genes

Potri.014G095700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.