Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01070 609 / 0 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 574 / 0 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 533 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT5G26310 311 / 5e-101 UGT72E3 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 311 / 8e-101 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT2G18570 310 / 8e-101 UDP-Glycosyltransferase superfamily protein (.1) AT5G66690 304 / 2e-98 UGT72E2 UDP-Glycosyltransferase superfamily protein (.1) AT4G36770 268 / 8e-85 UDP-Glycosyltransferase superfamily protein (.1) AT2G18560 260 / 1e-82 UDP-Glycosyltransferase superfamily protein (.1) AT3G16520 249 / 2e-77 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G168600 [exp] 823 / 0 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G138200 [exp] 595 / 0 AT4G01070 539 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G096000 [exp] 592 / 0 AT4G01070 544 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G041800 [exp] 394 / 3e-133 AT4G01070 390 / 9e-132 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.007G030500 [exp] 363 / 3e-121 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G030400 [exp] 342 / 5e-113 AT3G50740 566 / 0.0 UDP-glucosyl transferase 72E1 (.1) Potri.007G030300 [exp] 339 / 7e-112 AT3G50740 496 / 1e-173 UDP-glucosyl transferase 72E1 (.1) Potri.007G029800 [exp] 332 / 3e-109 AT3G50740 478 / 3e-166 UDP-glucosyl transferase 72E1 (.1) Potri.014G041900 [exp] 320 / 3e-105 AT4G01070 295 / 2e-95 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029452 [exp] 655 / 0 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 637 / 0 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 530 / 0 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 527 / 0 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001906 [exp] 419 / 6e-143 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10039588 [exp] 410 / 1e-139 AT4G01070 419 / 2e-143 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10003900 [exp] 410 / 1e-139 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001905 [exp] 400 / 1e-135 AT1G01420 391 / 3e-132 UDP-glucosyl transferase 72B3 (.1) Lus10003944 [exp] 359 / 2e-119 AT4G01070 400 / 1e-135 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024035 [exp] 347 / 1e-114 AT3G50740 486 / 3e-169 UDP-glucosyl transferase 72E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.014G096100.1 pacid=42762956 polypeptide=Potri.014G096100.1.p locus=Potri.014G096100 ID=Potri.014G096100.1.v4.1 annot-version=v4.1 ATGGCAGAAACAGATTCACCACCCCATGTAGCAATTTTACCTAGTCCAGGGATGGGTCATCTCATCCCACTCGTTGAGTTAGCCAAGAGACTTGTTCACC AACACAACTTGTCAGTCACCTTCATCATTCCGACAGACGGTTCTCCCTCTAAAGCTCAAAGATCAGTTCTTGGATCACTCCCTAGCACTATTCACTCAGT ATTTCTCCCCCCTGTAAATTTAAGTGACCTCCCTGAAGATGTCAAGATTGAAACCTTAATTAGCCTTACCGTGGCTCGCTCCCTTCCTTCTCTACGTGAT GTTCTTAGTTCTCTAGTCGCCAGTGGTACTAGAGTTGTGGCCTTGGTTGTTGATCTTTTTGGGACTGATGCATTTGATGTTGCTAGAGAATTCAAAGCCT CTCCTTACATTTTCTATCCTGCTCCAGCCATGGCTTTGTCTTTATTCTTTTATTTGCCAAAGCTTGATGAGATGGTTTCTTGCGAGTACAGTGAGATGCA AGAACCAGTTGAGATTCCCGGGTGCTTACCGATTCACGGGGGGGAGTTGCTCGACCCAACCCGAGATCGAAAGAACGATGCGTATAAATGGCTTCTTCAC CATTCAAAGAGGTATAGATTGGCTGAGGGGGTGATGGTAAATAGCTTCATTGACTTGGAAAGGGGGGCTCTAAAGGCTTTGCAAGAGGTAGAACCCGGTA AGCCACCCGTTTACCCGGTTGGTCCACTCGTCAATATGGATTCCAATACTAGTGGGGTTGAAGGGTCCGAGTGTTTGAAGTGGCTAGATGATCAGCCACT TGGCTCAGTGCTATTTGTTTCGTTCGGGAGTGGCGGGACCCTCTCGTTTGATCAGATAACTGAATTGGCTCTGGGTTTGGAAATGAGCGAGCAAAGATTT TTGTGGGTTGCGAGGGTTCCAAATGATAAAGTAGCTAATGCCACATATTTTTCCGTGGATAATCATAAGGACCCTTTTGATTTCTTACCAAAAGGTTTTT TGGATAGGACCAAGGGGAGAGGTCTAGTGGTGCCATCATGGGCACCACAAGCACAAGTGCTGAGTCACGGGTCAACAGGTGGGTTCTTAACCCACTGTGG TTGGAATTCCACCCTTGAAAGTGTTGTGAATGCTGTGCCATTAATCGTATGGCCACTCTATGCTGAGCAGAAAATGAATGCATGGATGCTAACCAAGGAC GTTGAAGTAGCCTTGAGGCCTAAGGCCAGTGAAAATGGTCTAATTGGAAGAGAGGAGATTGCAAATATTGTGAGGGGTCTAATGGAAGGTGAGGAAGGGA AGAGGGTCCGCAACAGAATGAAGGACCTGAAAGACGCAGCCGCCGAGGTACTCAGCGAAGCTGGATCTTCTACGAAGGCACTATCTGAGGTGGCTCGCAA GTGGAAGAACCACAAATGCACTCAGGATTGTAATTAA
AA sequence Show only first row Show all	>Potri.014G096100.1 pacid=42762956 polypeptide=Potri.014G096100.1.p locus=Potri.014G096100 ID=Potri.014G096100.1.v4.1 annot-version=v4.1 MAETDSPPHVAILPSPGMGHLIPLVELAKRLVHQHNLSVTFIIPTDGSPSKAQRSVLGSLPSTIHSVFLPPVNLSDLPEDVKIETLISLTVARSLPSLRD VLSSLVASGTRVVALVVDLFGTDAFDVAREFKASPYIFYPAPAMALSLFFYLPKLDEMVSCEYSEMQEPVEIPGCLPIHGGELLDPTRDRKNDAYKWLLH HSKRYRLAEGVMVNSFIDLERGALKALQEVEPGKPPVYPVGPLVNMDSNTSGVEGSECLKWLDDQPLGSVLFVSFGSGGTLSFDQITELALGLEMSEQRF LWVARVPNDKVANATYFSVDNHKDPFDFLPKGFLDRTKGRGLVVPSWAPQAQVLSHGSTGGFLTHCGWNSTLESVVNAVPLIVWPLYAEQKMNAWMLTKD VEVALRPKASENGLIGREEIANIVRGLMEGEEGKRVRNRMKDLKDAAAEVLSEAGSSTKALSEVARKWKNHKCTQDCN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096100 [exp]	0	1
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.009G148800 [exp]	1.00	0.8008
AT2G14095			unknown protein		Potri.001G310100 [exp]	4.24	0.7728
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.010G027600 [exp]	8.30	0.7582
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Potri.017G088700 [exp]	9.16	0.7389
AT3G61490			Pectin lyase-like superfamily ...		Potri.003G131700 [exp]	11.83	0.7556
AT1G54460			TPX2 (targeting protein for Xk...		Potri.013G042800 [exp]	16.52	0.7215
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.002G151900 [exp]	16.94	0.7383
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Potri.016G024500 [exp]	18.00	0.7350
AT5G13810			Glutaredoxin family protein (....		Potri.003G198100 [exp]	18.02	0.7412
AT1G23460			Pectin lyase-like superfamily ...		Potri.011G159000 [exp]	19.49	0.7316

Compare expression of checked genes

Potri.014G096100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.