Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01050 389 / 4e-132 TROL thylakoid rhodanese-like (.1) AT3G25480 94 / 1e-21 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G23060 46 / 4e-05 CaS calcium sensing receptor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G169100 [exp] 555 / 0 AT4G01050 400 / 1e-136 thylakoid rhodanese-like (.1) Potri.002G239800 [exp] 96 / 9e-22 AT3G25480 251 / 2e-82 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.004G150300 [exp] 44 / 0.0002 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 44 / 0.0002 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 44 / 0.0002 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029448 [exp] 395 / 3e-135 AT4G01050 404 / 2e-138 thylakoid rhodanese-like (.1) Lus10005947 [exp] 394 / 4e-134 AT4G01050 415 / 1e-141 thylakoid rhodanese-like (.1) Lus10005853 [exp] 85 / 3e-18 AT3G25480 219 / 1e-70 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10001215 [exp] 76 / 5e-15 AT3G25480 208 / 2e-66 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G096500.2 pacid=42764623 polypeptide=Potri.014G096500.2.p locus=Potri.014G096500 ID=Potri.014G096500.2.v4.1 annot-version=v4.1 ATGGAGGCCTTCAATGCAGCAAGCTCGACACCATTATCAGTTCTCTGCGAGAGAAGATCAGAATCCAGAAAATCTTTATCACTCCCTACAGTTTCACCAC TCAAAATCTCTCATTCTTTCTCTACAAGCACGAGCCGATCAACTACACAAGAGTGTCTATCAAGGACTTTACATGGTGGTATAGTGCTACTATCTTCAGT TCTTGGTAATGGGCTAGCTAGAGCTTTAACATATCAAGAAGCACTGGAACAGTCTGCGCGCTCCTTCTCATCTGATGCAAACGGTGTCCTAGATAGTGTC ATCAAATTTGGAACGGAAAACCCAACAATCGTAGCAGGTAGTGTTACAGTTTTGGCAGTTCCACTAGTTCTGTCTCTGGTGCTAAACAAGTCAAAGTCCT GGGGTGTAGAGTCTGCAAAAAAGGCGTATGCAGCGTTGGGTGTTGACGCAAATGCTCAATTGCTTGATATAAGAGCACCAGTGGAGTTTAGACAAGTGGG CAGTCCTGATATCAGGGGTTTGAGAAAGAAACCAGTGCCAATTGTTTATGAGGGTGAAGACAAGCCAGGTTTCTTGAAGAAGCTGTCTTTGAAGTTTAAG GAACCAGAGAATACCACGTTGTTCATTCTAGACAAATTCGATGGCAACTCCGAATTGGTTGCAGAGTTGGTCACTGTAAATGGATTTAAAGCAGCTTATG CAATCAAAGATGGTGCAGAAGGACCCCGGGGATGGATGAATAGTGGGCTTCCCTGGATACCACCAAAGAAAGCTTTTAGTCTTGACCTTGGTGATTTATC AGACGCTATCGGTGGTGCACTAGGAGAGGGCTCCGATGCCTTGCCTGTCACCTTTGCAATTGCAGCAGCTACTGGCTTAGGTGTATTGGCATTCTCAGAG ATTGAAGCAATACTCCAAGTATTAGGCTCAGCTGCACTAATTCAGTTTGTGAGTAAGAAACTCCTGTTCGCTGAGGACCGTAAGCAAACTCTGGAACAAG TTGATGAATTCTTGACCACCAAGATTGCACCTAAAGAGTTAGTGGATGAATTGAAGGACATAGGGAAGGCTCTTCTACCAGTAGCAGTGACGAGCAAGGC TCTTCCTGCGCCTGCAGAAGCGAGTCCAGAACCTGCTGCTGCTGATAGTAGTGTACAGAACGCAGAAGCTGCTCCCCAGATAAATTCAGCACCCAAAACA GAAGCTAAAGCTGAACCACTTTCTGGATTTTCAAGGCCACTTTCTCCATATCCAACTTATCCGGATCTCAAGCCCCCAACGTCGCCCACCCCATCTCAAC CTTAA
AA sequence Show only first row Show all	>Potri.014G096500.2 pacid=42764623 polypeptide=Potri.014G096500.2.p locus=Potri.014G096500 ID=Potri.014G096500.2.v4.1 annot-version=v4.1 MEAFNAASSTPLSVLCERRSESRKSLSLPTVSPLKISHSFSTSTSRSTTQECLSRTLHGGIVLLSSVLGNGLARALTYQEALEQSARSFSSDANGVLDSV IKFGTENPTIVAGSVTVLAVPLVLSLVLNKSKSWGVESAKKAYAALGVDANAQLLDIRAPVEFRQVGSPDIRGLRKKPVPIVYEGEDKPGFLKKLSLKFK EPENTTLFILDKFDGNSELVAELVTVNGFKAAYAIKDGAEGPRGWMNSGLPWIPPKKAFSLDLGDLSDAIGGALGEGSDALPVTFAIAAATGLGVLAFSE IEAILQVLGSAALIQFVSKKLLFAEDRKQTLEQVDEFLTTKIAPKELVDELKDIGKALLPVAVTSKALPAPAEASPEPAAADSSVQNAEAAPQINSAPKT EAKAEPLSGFSRPLSPYPTYPDLKPPTSPTPSQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Potri.014G096500 [exp]	0	1
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.010G200000 [exp]	1.00	0.9634
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.016G078600 [exp]	4.69	0.9442
AT5G24490			30S ribosomal protein, putativ...		Potri.015G002200 [exp]	8.36	0.9031
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Potri.001G253700 [exp]	9.69	0.9112
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Potri.002G206300 [exp]	10.67	0.9197
AT2G01755			unknown protein		Potri.008G135400 [exp]	12.36	0.9419
AT5G15140			Galactose mutarotase-like supe...		Potri.017G080000 [exp]	13.41	0.9162
AT4G17740			Peptidase S41 family protein (...		Potri.008G173900 [exp]	13.71	0.9413
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Potri.012G119800 [exp]	14.89	0.9136
					Potri.011G127400 [exp]	15.42	0.9154

Compare expression of checked genes

Potri.014G096500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.