Plant FIBer expression Database

Potri.014G096700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01040 565 / 0 Glycosyl hydrolase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005946
[exp]
573 / 0 AT4G01040 571 / 0.0 Glycosyl hydrolase superfamily protein (.1)
Lus10029447
[exp]
570 / 0 AT4G01040 560 / 0.0 Glycosyl hydrolase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00704 Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence
>Potri.014G096700.1 pacid=42763224 polypeptide=Potri.014G096700.1.p locus=Potri.014G096700 ID=Potri.014G096700.1.v4.1 annot-version=v4.1
ATGGCGAGGAAGCGAGGCCGCCGAGTAGCGCCGAGTTCGGATCATCATGAAACAGGAGCCAAGACGTCCACTCGACCGGACCAATTCAGCGAGTCAGCAG
CTTCTGATCGCAAGCTGATAACCATATTTATCGTCTTCTTCGTCGTAATTCCTGCAGTATCTGTACTCGTGTACCGTATCAAATACGCTCCAAATAAGGA
CTCGTCATATCCACAGTTTCAGGAAGACGGACTCGTTAAAACCGACGTGGATTACCAAGAAATACTCGACGAGAATTCGAAGGTTTTGAAGAATGAATCT
CACCGGCATTACACATATCCTGTGTTGGCCTACATTACTCCATGGAATTCGAAGGGATATGAAATGGCGAAGCGGTTTACTAATAAGTTTACGATATTAT
CTCCTGTTTGGTATGATCTGAAGAGTCAAGGTACTGGACTAGTTCTGGAGGGGAGACATAATGCTGATATGGGATGGATTTCAGAGCTCAGAAGGAATGG
GAATGCTCTGGTATTACCTAGAGTTGTTCTGGAAGCATTTCCAAAGGAGCTGCTTAAGAAGAAGAAACTTAGAGATAAAGCTATTGACCTGATAATATCA
GAGTGCAAGGAAATGGAATATGACGGCATTGTGCTTGAATCCTGGTCAAGGTGGGCAGCTTATGGTATTTTGCATGATCCTGAAATGAGGAATAAGGCAC
TGCAGTTTATAAAACAACTTGGGCATGCAATGCATTCAGTAAGCTCATCAAGGAATGGGAAGCAATATTTACAATTGGTCTACGTTATCGGTCCACCATA
TTCAGAGAAGCTTCAACCTCATGACTTTGGTCCAGAGGATCTTCAGAGCTTAAGTGATGATGTAGATGGTTTCTCGTTCATGACATATGACTTCTCAAGT
CCTCATAACCCAGGTCCAAATGCACCTTTGAAGTGGATCCGTTTCACTCTGCAGATTCTCCTTGGCAACAGTGGTGCTCGGGCCCTGGCCAATAAGATAT
TTCTGGGCATCAATTTTTTTGGAAATGATTTCGTGATTTCTGAAGGTTCTGAGGGTGGTGGAGCAATCACAGGAAGGGAATACCTCTCTTTACTGGAGAA
GCACAAGCCTGAATTGCAATGGGAAAAGAACAGCGGGGAACATTTTTTTCTCTACGTTGACGATGAGCATATCAATCATGCAGTGTTCTACCCGTCATTG
ATGTCAATTTCTATTCGGCTAGAAGAAGCTCGGCTGCAGGGAGTTGGAATCTCAATCTGGGAAATTGGGCAAGGTTTGGATTACTTTTTTAATCTCTTAT
AA
AA sequence
>Potri.014G096700.1 pacid=42763224 polypeptide=Potri.014G096700.1.p locus=Potri.014G096700 ID=Potri.014G096700.1.v4.1 annot-version=v4.1
MARKRGRRVAPSSDHHETGAKTSTRPDQFSESAASDRKLITIFIVFFVVIPAVSVLVYRIKYAPNKDSSYPQFQEDGLVKTDVDYQEILDENSKVLKNES
HRHYTYPVLAYITPWNSKGYEMAKRFTNKFTILSPVWYDLKSQGTGLVLEGRHNADMGWISELRRNGNALVLPRVVLEAFPKELLKKKKLRDKAIDLIIS
ECKEMEYDGIVLESWSRWAAYGILHDPEMRNKALQFIKQLGHAMHSVSSSRNGKQYLQLVYVIGPPYSEKLQPHDFGPEDLQSLSDDVDGFSFMTYDFSS
PHNPGPNAPLKWIRFTLQILLGNSGARALANKIFLGINFFGNDFVISEGSEGGGAITGREYLSLLEKHKPELQWEKNSGEHFFLYVDDEHINHAVFYPSL
MSISIRLEEARLQGVGISIWEIGQGLDYFFNLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G01040 Glycosyl hydrolase superfamily... Potri.014G096700
[exp]
0 1
AT4G18400 unknown protein Potri.004G133260
[exp]
4.79 0.6871
AT4G27585 SPFH/Band 7/PHB domain-contain... Potri.012G010001
[exp]
6.16 0.7881
AT4G27585 SPFH/Band 7/PHB domain-contain... Potri.012G005500
[exp]
6.48 0.7219
AT5G05670 signal recognition particle bi... Potri.002G020900
[exp]
14.49 0.7226
AT4G38495 unknown protein Potri.016G127200
[exp]
28.40 0.7259
AT5G01780 2-oxoglutarate-dependent dioxy... Potri.016G132300
[exp]
31.96 0.6963
AT2G34900 GTE1, GTE01, IM... IMBIBITION-INDUCIBLE 1, GLOBAL... Potri.010G219200
[exp]
33.13 0.7125
AT5G11330 FAD/NAD(P)-binding oxidoreduct... Potri.006G248800
[exp]
37.54 0.7075
AT2G28480 RNA-binding CRS1 / YhbY (CRM) ... Potri.007G129600
[exp]
38.49 0.6418
AT1G20823 RING/U-box superfamily protein... Potri.007G064401
[exp]
40.24 0.6751

Potri.014G096700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.