Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01030 906 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 514 / 5e-170 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 469 / 3e-151 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 464 / 4e-150 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 460 / 1e-147 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 451 / 6e-145 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 455 / 6e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 452 / 7e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 446 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 439 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215500 [exp] 524 / 2e-171 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G021300 [exp] 506 / 2e-167 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 512 / 4e-166 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 499 / 1e-163 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 493 / 4e-161 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 491 / 6e-160 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 491 / 6e-159 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 490 / 4e-157 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 474 / 5e-154 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040917 [exp] 1171 / 0 AT4G01030 898 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009813 [exp] 1071 / 0 AT4G01030 820 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013991 [exp] 513 / 2e-167 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 507 / 8e-165 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 498 / 1e-161 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 500 / 4e-161 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 496 / 2e-160 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 487 / 2e-159 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035788 [exp] 479 / 5e-156 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017446 [exp] 477 / 6e-155 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.014G097000.1 pacid=42763717 polypeptide=Potri.014G097000.1.p locus=Potri.014G097000 ID=Potri.014G097000.1.v4.1 annot-version=v4.1 ATGCCATTTCTCCACACACCAACTCCATTCACCATGGACAAACTGGCTCCATTTCACCATAGCCCGCCTCTACTTCAAAACCACAAGCCAAAACCAATTA GAACCCATTCACCACCATCTCTTTCTGTTGCTCTCACAACAACCTCGTCCCTTGAAACTACACCTAGGCCTACACATGTACCGAATCTTGGCTCTTTAAA TGGCTTCACTGCTGATAGCAATACTTTGGACTCAGTTAAAGCAATGCATGCCCAGATGATAAAAAAGGGTAACAAATGGAATTCAGATTCTATGGCGAAG CATTTGATCACTTCTTATTTAGAACTTGGTGATTGCAAGTCAGCTGCAGTGGTTTTTTTTGTGGGTTTTGCGCGGAACTATGTTATGTGGAATAATTTCT TGGAGGAGTTCAAGAGCTTTGGTGGTGATCCAAGTGAAGTTCTTGAGGTCTTTAAAGAATTGCATTGTGAAGGAGTGGTGTTTGATAGTAGAGTGATTAG TGTGGTTTTGAAGATTTGCGCAGGTGTGATGAATTTATGGCTTGGTTTGGAAGTACATGCTAGTTTGATCAAGAGGGGTTTTGAATTAGATGTATATGTG AGGTGTGCACTAATGAATTTTTATGGGAGGTGTTGGTGTGTGGAAAGTGCTAATCAAGTGTTTCATGAACCCCGCAATTTAGATGATCTCTTGTGGAACG AGGCAATCTTGGTCAACTTGAAGAATGAGAGATTTGTTAAGGCTCTAGAATTGTTTAGAGAGATGCAGTTCTTGACTAGTAAAGTTAATGCTACTACAGT TTTGAAGATTCTGCAAGCTTGTAGCAAGAAGGGGGCTCTCAATGAAGGGAAGCAGATTCACGGGTATGTGTTAAAGCTTGCTATGGAATCAAATTTGTCG ATATGCAATTCTTTGATTATCATGTACTCTAGGAATGGAAAAATCAAACTAGCTAGCAGGGTATTTGATTCAATGAAAGATCATAGTTTGTCCTCATGGA ATTCAATTATCTCAAGTTATTCTACACTTGGTTACTTGAATGATGCTTGGAATCTTTTCTGTAAAATGGAAAGGTCAGGCACAAAACCAGACATAATAAC CTGGAATAGCATATTGTCAGGCAATGCTATTGTTAGTTCATATAAAGAAGTCCTCATAATTTTGCGGAGGATGCAAGCTGCGGGTTTTAGGCCAAATCCT CGCTCCATCACTAGCGTTCTTCAAGCTGTCATTGAACCGGGGCTCCTGAATTTCGGGAAAGAAATTCATGCTTATGTGATAAGAAATGGGCTTGACTATG ATGCATACGTGGGAACTTCATTGTTAGACATGTATGTGAAGAATGACTGCCTCACCAGTTCTCAGGCGATTTTTGATAATATGAAAAACAAGAATATTGT TGCTTGGAATTCATTAATATCAGGGTATTCGTTCAAGGGACATTTTGACCATGCAAAAAGATTGTTGAATCGTATGAAAGAGGAAGGAATTAAACCAGAT CTCATTACATGGAACAGCCTGGTTGCCGGGTATTCAATGCGTGGCCACACCAAGGAAGCTTTAGCTTTGATTCATGATATCAAAATTTCGGGATTGACAC CAAATGTGGTTTCATGGACTGCTCTCATATCAGGCTGTTCACAGAATGGTAACTACTCGGAATCTATTGAGGCTTTTGTCCAAATGCAAGAAGAAGGTAT TAAGCCAAACTCTGCCACTATATCCAGCTTACTTAGGACTTGTGGGGGCCTATCCTTGTTACAGAAGGGTAAAGAAATTCACTGCCTAAGTATTAGAAAA AGCTTCATTGAAGATTTATATGTAGCTACAGCACTCATTGACACGTACAGTAAGTCAGGCGATTTAGAAAGTGCTCATAAAGTTTTCTGGAGTGCAGAGA AGACATTAGCATCTTGGAATTGCATGATTATGGGATTTGCCATTAATGGCTGTGGAAGAGAGGTGATTGCACTCCTTGATGGAATGCAAAGAGCTGGTAT CTTGCCAGATGCTATAACCTTCACAGCCCTCCTCTCTGGTTGCAAGAACTCTGGTTTAGTTGAAGAGGGATGGAAATGCTTTGATATGATGAGCAACGAC TATGGTATAAAACCAACCATTGAGCATTATTCTTGCATGGCAGATCTTCTTGGAAGAGCTGGCTACCTTGATGAAGCTTGGGACTTCATTCAAACAATGC CAATAAAGCCAGATGCTAGTGTTTGGGGTGCCATGCTTGGATCTTGCCGAATCCACGGAAACATTGAGTTTGCAGAGATTGCAGCGAAGGAACTTTTCAA GTTAGAACCATATAATTCTGCTAATTACGTTCTGATGTTGAGCTTATATGCCATGTCAAACAGATGGGAGGATGTTGACCGTATTAAAGATCTCATGGAT ACCAGGGGTATTAAGCCCAGGCAAGTATGGAGCTGGATTCAAATTGATCAGAGAGTTCATCTGTTCTCTGCTGGAGGAATACCCCATCAAGATGAAGGAG AGATATACTATGAGTTGTATCAGTTGGTCTCTGAACTGAAGAAATTTGGATATTTGCCGGATGTAAACTGCGTATACCAGAACATTGATGAGGAAGAAAA GGTGAAGATGCTCCTAAGTCACACTGAGAAACTTGCAATTACTTATGGACTAATCAAAACAAGTAGCGCACCAATCAGAGTGATCAAGAACACAAGAATT TGTTCTGATTGTCACACAGCAGCAAAACTCATTTCCCTTGTTCGCAGTAGAGAGATTTTCCTCAGGGATGGTGTTCGGTTTCACCATTTTAAGGCAGGGA AGTGTTCTTGCAACGACTACTGGTAA
AA sequence Show only first row Show all	>Potri.014G097000.1 pacid=42763717 polypeptide=Potri.014G097000.1.p locus=Potri.014G097000 ID=Potri.014G097000.1.v4.1 annot-version=v4.1 MPFLHTPTPFTMDKLAPFHHSPPLLQNHKPKPIRTHSPPSLSVALTTTSSLETTPRPTHVPNLGSLNGFTADSNTLDSVKAMHAQMIKKGNKWNSDSMAK HLITSYLELGDCKSAAVVFFVGFARNYVMWNNFLEEFKSFGGDPSEVLEVFKELHCEGVVFDSRVISVVLKICAGVMNLWLGLEVHASLIKRGFELDVYV RCALMNFYGRCWCVESANQVFHEPRNLDDLLWNEAILVNLKNERFVKALELFREMQFLTSKVNATTVLKILQACSKKGALNEGKQIHGYVLKLAMESNLS ICNSLIIMYSRNGKIKLASRVFDSMKDHSLSSWNSIISSYSTLGYLNDAWNLFCKMERSGTKPDIITWNSILSGNAIVSSYKEVLIILRRMQAAGFRPNP RSITSVLQAVIEPGLLNFGKEIHAYVIRNGLDYDAYVGTSLLDMYVKNDCLTSSQAIFDNMKNKNIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPD LITWNSLVAGYSMRGHTKEALALIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAFVQMQEEGIKPNSATISSLLRTCGGLSLLQKGKEIHCLSIRK SFIEDLYVATALIDTYSKSGDLESAHKVFWSAEKTLASWNCMIMGFAINGCGREVIALLDGMQRAGILPDAITFTALLSGCKNSGLVEEGWKCFDMMSND YGIKPTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVWGAMLGSCRIHGNIEFAEIAAKELFKLEPYNSANYVLMLSLYAMSNRWEDVDRIKDLMD TRGIKPRQVWSWIQIDQRVHLFSAGGIPHQDEGEIYYELYQLVSELKKFGYLPDVNCVYQNIDEEEKVKMLLSHTEKLAITYGLIKTSSAPIRVIKNTRI CSDCHTAAKLISLVRSREIFLRDGVRFHHFKAGKCSCNDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01030			pentatricopeptide (PPR) repeat...		Potri.014G097000 [exp]	0	1
AT5G24490			30S ribosomal protein, putativ...		Potri.012G005800 [exp]	1.41	0.9453
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Potri.015G121101 [exp]	2.44	0.9218
AT5G08520	MYB		Duplicated homeodomain-like su...		Potri.007G076200 [exp]	3.46	0.9080
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.014G038900 [exp]	5.65	0.9211
AT4G26090		RPS2	RESISTANT TO P. SYRINGAE 2, NB...		Potri.006G147100 [exp]	5.91	0.9201
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.014G005000 [exp]	6.00	0.9032
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.019G085200 [exp]	7.93	0.9127
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.005G039300 [exp]	7.93	0.9168
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.001G367500 [exp]	9.89	0.8835
AT3G53170			Tetratricopeptide repeat (TPR)...		Potri.009G058300 [exp]	10.67	0.9028

Compare expression of checked genes

Potri.014G097000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.