Plant FIBer expression Database

Potri.014G097200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61680 580 / 0 alpha/beta-Hydrolases superfamily protein (.1)
AT1G02660 380 / 5e-122 alpha/beta-Hydrolases superfamily protein (.1)
AT3G62590 342 / 7e-108 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G169600
[exp]
1123 / 0 AT3G61680 576 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Potri.002G197900
[exp]
376 / 5e-120 AT1G02660 561 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009811
[exp]
719 / 0 AT3G61680 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10040915
[exp]
390 / 5e-128 AT3G61680 415 / 1e-138 alpha/beta-Hydrolases superfamily protein (.1)
Lus10010031
[exp]
373 / 3e-119 AT1G02660 702 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10036334
[exp]
366 / 2e-116 AT1G02660 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF01764 Lipase_3 Lipase (class 3)
Representative CDS sequence
>Potri.014G097200.5 pacid=42764189 polypeptide=Potri.014G097200.5.p locus=Potri.014G097200 ID=Potri.014G097200.5.v4.1 annot-version=v4.1
ATGGTATGCAATTCAATGGCTATTCCTTCCTCTCAAGCAACTGTAGCACAAAAAGATAGGTTCAAAGAACACAATGGCCTTTACCGTTCAAATTCTGGCA
AAGATTTCTGCAACCGAGCCACCATGCGGAGATCCTATTCAGATAACCACCTCTGTTATTCCGTTAACTACGTCCGTGCTGCATCATCACAGCCAAAGCT
TAAAAGCAGCCGTTCGGTTGGTATCTTCCCTTTTCAGATTTCTAGCTCCATAATCCCAGCATCACTTCGATCATTTCTGTTTGACCCTGAGACAAGCAAA
GACATGAATATTGCCAAGGACGGAGTTGACGGTTCATTAAAGAAAGATGAGATCATAGTGGACAGTTCAGATGAGGGCAGTGCTAGCACTGAACTAGGAG
AGGTAAAGAGAACGAATTGGGTGGAGCGGATTTACGAGATCAGAAATCATTGGAGGAATAGGCAACAGAAAGAGGACATTTATGGAGAAGAAGAGTTATC
TGATGCCAGCAAAAATGGTGATAGTAATTGCGAGGATGGCTGCATGGTAGACTATAACTCAGACGAGGAAGGAGGAGAAATAAAATATGATCGAGAAACA
TTTTTAAGATTTTTGGCTCCAGTTGGTTGGTCTGATACCAAGCTACTCTCAAAGCTGGCTTTCTTGTGCAATATGGCTTATGTTATACAAGAGATTAAGG
CCATGGATTTGAGGAGATATTACGGCCTACACTTTGTCACATCTTCTTTAGAAAAGAAAGCGGAGGCTGCTGCCGTGAAAGAGAAGCTTGATCATGACGC
GACTCACGCCCCTGCAGCTACCCTTGTAGTTGCCAAATCCAACTCAGGGAACACGGAGGAACCTGAGCAGAAGCACCCCATCCGCTCATCTCTTGCTTAT
GGGATTGCTGCCTCAGCTGCATCTTATGTCCAATCACGTGCACAGGGCCTTCTTTCTCATGGCATTCAACCTCAGCAGGAAGGTGATTGTACTGATTCAA
GCAGTACTGGAAACCAACCAGTCGAGGACGTAGACCAGCCCGTTGAAGATGGTGAGAGACCTCAGCGAGTATATAAATCAGAGGTGGCTGCTTATGTTGC
AGCATCAACTATGACAGCGATGGTTGCGGCCGGGGAGAAGGAAAAACAGGAGGCAGCAAGGGACCTTCAGTCACTCCACTCAGCACCCTGTGAATGGTTT
GTTTGTGACGATGTAAGCACGTATACACGCTGCTTTGTGATTCAGGGATCCGACTCCCTTGCATCTTGGCAGGCAAACCTCCTATTTGAACCCACTAAAT
TTGAGGGTACAGATGTGCTTGTTCACAGAGGAATTTATGAAGCGGCAAAGGGAATATATGAACAGTTCATGCCAGAAATAATGGAACATTTGAACAAACA
TGGAGAACGTGCTAAGCTTCAATTTACGGGCCATTCTCTTGGGGGTAGCCTCTCCCTTTTAGTCCACTTGATGCTCCTGACCAGGAAGATCGTCAAGACC
TCTGCTCTTAGGCCAGTGGTCACTTTTGGCTCACCATTTGTGTTCTGTGGAGGCCAAAAGATCCTAAATTATTTGGGGTTAGATGACAACCATGTACACT
GTGTAGTGATGCATAGAGATATTGTCCCAAGAGCTTTCTCCTGCAACTACCCCAACCATGTGACACTAGTCCTCAAGCGATTAAATGGCTCCTTCCAGTC
ACACCCTTGTCTAACTAAAAATAAATTCCTGTACTCTCCACTTGGGAAATTATTCATACTCCAACCTGATGAGAAGTCATCTCCTCCACACCCTTTACTC
CCTCCAGGAAGTGCACTGTATGCTTTTGATAAAACCCAACACAGGTTCGCTGCAAGTGCCATAAAGGCATTCCTGAATTGTCCCCACCCACTGGAAACTC
TTAGCGATCCCACAGCCTATGGCTCGGAAGGTACAATTCTAAGAGACCATGACTCGAGCAACTACCTAAAGGCAGTGAACAAGGTTCTAAGGCAAAATTC
AAAGATGGTTGGTTGGAAAGTACATGAATGGGGGAATCAATTGTGGCCATTGCTTGCCTCACCATCTCCACACTTATGGAACCACGAAAACACTTTGGAA
AGAAGTATGTTTGGCACCAAGAAGGCCATGACTGGTGTGTAA
AA sequence
>Potri.014G097200.5 pacid=42764189 polypeptide=Potri.014G097200.5.p locus=Potri.014G097200 ID=Potri.014G097200.5.v4.1 annot-version=v4.1
MVCNSMAIPSSQATVAQKDRFKEHNGLYRSNSGKDFCNRATMRRSYSDNHLCYSVNYVRAASSQPKLKSSRSVGIFPFQISSSIIPASLRSFLFDPETSK
DMNIAKDGVDGSLKKDEIIVDSSDEGSASTELGEVKRTNWVERIYEIRNHWRNRQQKEDIYGEEELSDASKNGDSNCEDGCMVDYNSDEEGGEIKYDRET
FLRFLAPVGWSDTKLLSKLAFLCNMAYVIQEIKAMDLRRYYGLHFVTSSLEKKAEAAAVKEKLDHDATHAPAATLVVAKSNSGNTEEPEQKHPIRSSLAY
GIAASAASYVQSRAQGLLSHGIQPQQEGDCTDSSSTGNQPVEDVDQPVEDGERPQRVYKSEVAAYVAASTMTAMVAAGEKEKQEAARDLQSLHSAPCEWF
VCDDVSTYTRCFVIQGSDSLASWQANLLFEPTKFEGTDVLVHRGIYEAAKGIYEQFMPEIMEHLNKHGERAKLQFTGHSLGGSLSLLVHLMLLTRKIVKT
SALRPVVTFGSPFVFCGGQKILNYLGLDDNHVHCVVMHRDIVPRAFSCNYPNHVTLVLKRLNGSFQSHPCLTKNKFLYSPLGKLFILQPDEKSSPPHPLL
PPGSALYAFDKTQHRFAASAIKAFLNCPHPLETLSDPTAYGSEGTILRDHDSSNYLKAVNKVLRQNSKMVGWKVHEWGNQLWPLLASPSPHLWNHENTLE
RSMFGTKKAMTGV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G61680 alpha/beta-Hydrolases superfam... Potri.014G097200
[exp]
0 1
AT4G36430 Peroxidase superfamily protein... Potri.019G125500
[exp]
1.41 0.8278 RIP1.2
Potri.014G151101
[exp]
4.24 0.8029
AT5G13210 Uncharacterised conserved prot... Potri.003G165200
[exp]
11.13 0.7869
AT1G66950 ABCG39, PDR11, ... ATP-binding cassette G39, plei... Potri.008G024400
[exp]
11.13 0.8338
Potri.005G062450
[exp]
22.13 0.7453
AT3G22590 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROM... Potri.010G085500
[exp]
25.33 0.7669 PAFE901
AT5G22750 RAD5A, RAD5 DNA/RNA helicase protein (.1) Potri.004G189400
[exp]
26.85 0.7643
AT1G14185 Glucose-methanol-choline (GMC)... Potri.008G087400
[exp]
31.06 0.7807
AT3G05950 RmlC-like cupins superfamily p... Potri.011G162600
[exp]
40.69 0.7583 Pt-GER2.26
Potri.001G439825
[exp]
51.16 0.7325

Potri.014G097200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.