Plant FIBer expression Database

Potri.014G097300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G01350 448 / 3e-159 C3HZnF Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1)
AT5G06420 438 / 1e-154 C3HZnF Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2)
AT4G01023 94 / 1e-22 RING/U-box superfamily protein (.1)
AT2G23780 42 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G127900
[exp]
42 / 0.0003 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040914
[exp]
450 / 4e-160 AT1G01350 469 / 2e-167 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1)
Lus10009810
[exp]
446 / 2e-158 AT1G01350 467 / 1e-166 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1)
Lus10016796
[exp]
42 / 0.0002 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1)
Lus10022492
[exp]
42 / 0.0002 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0537 CCCH_zf PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
CL0229 RING PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence
>Potri.014G097300.1 pacid=42763477 polypeptide=Potri.014G097300.1.p locus=Potri.014G097300 ID=Potri.014G097300.1.v4.1 annot-version=v4.1
ATGGCAGATCCAACTGAACGCGAACCTCAACAGACTGAAGCAGTGTGCAATTTTTTTAGAAAACCGATGAAGAACAAGAATATTAGAAAGAGAATGATTG
ATGAGGATGAGGATGAGGATGAGGATTCAAAAACTCAAACCTCTCTGTTACACAGTCAGAAAAAAGCCCCGAAAGCTGACAATAAGCTCTACTTTTCTAC
TGGACCGTTAAAGAAATCGTCTGAATCAAATGCAGAACCTGAAAGGTTGTTATTTCAATTCGAGTCTTCTAAGGAAATTCAAGTTCAGCATGATAGTAGA
GCAACTGCAACTCTAGAAACTGAGACTGAGTTTTCGAAAGATGCCCGGGCCATTCGTGAGAGAGCTCTAAAGCAAGCTGATGATGCTTTGAAGGGTAAAA
AAATGAGTTCTGGTGATGAAAAGTTGTACAAGGGGATTCATGGGTATACTGATCATAAAGCTGGGTTTCGAAGAGAGCAAACGATTTCAAGTGAGAAAGC
AGGTGGATCACATGGGCCTCTCAGGGCTTCTGCTCACATAAGAGTGTCAGCAAGGTTTGATTATCAGCCGGATATATGTAAGGATTATAAAGAAACTGGT
TACTGTGGGTATGGAGATTCATGCAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGATGGAGAAAGAATGGGAGGAAGCCGAAAAGGCAA
GGAAGAGAAATTTGGCCTTGGGAATGGATGATGAGGAGGTTGGGGGTGCAGGGCACGATGATGATGACGAAGATGAGTTGCCATTTGCTTGTTTCATTTG
TAGGGAGAATTTTGTGGATCCTGTCATGACTAAATGCAAACATTACTTCTGTGAGCATTGCGCTTTAAAGCATCATGCGAAGAACAAGAAGTGTTTTGTG
TGCAATGAACCTACTCTTGGCATCTTCAATGCAGCTCATGAAATACGCAAAAAGATGGCTGATGCTGGTAAACGATAG
AA sequence
>Potri.014G097300.1 pacid=42763477 polypeptide=Potri.014G097300.1.p locus=Potri.014G097300 ID=Potri.014G097300.1.v4.1 annot-version=v4.1
MADPTEREPQQTEAVCNFFRKPMKNKNIRKRMIDEDEDEDEDSKTQTSLLHSQKKAPKADNKLYFSTGPLKKSSESNAEPERLLFQFESSKEIQVQHDSR
ATATLETETEFSKDARAIRERALKQADDALKGKKMSSGDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETG
YCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKRNLALGMDDEEVGGAGHDDDDEDELPFACFICRENFVDPVMTKCKHYFCEHCALKHHAKNKKCFV
CNEPTLGIFNAAHEIRKKMADAGKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G01350 C3HZnF Zinc finger (CCCH-type/C3HC4-t... Potri.014G097300
[exp]
0 1
AT4G39150 DNAJ heat shock N-terminal dom... Potri.004G158300
[exp]
1.41 0.8716
Potri.001G077400
[exp]
2.82 0.8584
AT3G05700 Drought-responsive family prot... Potri.014G125500
[exp]
3.46 0.8589
AT1G54150 E3 Ubiquitin ligase family pro... Potri.003G065500
[exp]
7.48 0.8393
AT2G17200 DSK2 ubiquitin family protein (.1) Potri.004G205100
[exp]
7.48 0.8145
AT1G03910 unknown protein Potri.006G118700
[exp]
7.74 0.8491
AT3G29270 RING/U-box superfamily protein... Potri.004G125400
[exp]
7.93 0.8391
AT1G55170 unknown protein Potri.003G037900
[exp]
8.06 0.8164
AT1G09760 U2A' U2 small nuclear ribonucleopro... Potri.001G072100
[exp]
10.09 0.8108
AT5G15080 Protein kinase superfamily pro... Potri.010G033800
[exp]
11.83 0.8512

Potri.014G097300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.