Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63630 768 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08610 732 / 0 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 692 / 0 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT1G63250 510 / 3e-170 DEA(D/H)-box RNA helicase family protein (.1) AT2G07750 503 / 5e-167 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 213 / 3e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 209 / 4e-58 DEA(D/H)-box RNA helicase family protein (.1) AT5G54910 200 / 2e-54 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 186 / 4e-50 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 182 / 1e-48 DEAD box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G169800 [exp] 1093 / 0 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G124100 [exp] 548 / 0 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G107300 [exp] 531 / 3e-178 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G250700 [exp] 227 / 4e-65 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 224 / 7e-64 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 207 / 7e-57 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 181 / 2e-47 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 176 / 1e-45 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.001G347100 [exp] 175 / 1e-45 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030265 [exp] 771 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004017 [exp] 765 / 0 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012633 [exp] 692 / 0 AT5G08610 719 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010127 [exp] 621 / 0 AT5G08610 639 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043479 [exp] 532 / 1e-180 AT1G63250 767 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10034109 [exp] 308 / 5e-99 AT1G63250 444 / 5e-152 DEA(D/H)-box RNA helicase family protein (.1) Lus10034110 [exp] 227 / 4e-67 AT2G07750 330 / 7e-106 DEA(D/H)-box RNA helicase family protein (.1) Lus10027240 [exp] 217 / 3e-61 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 215 / 2e-60 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 214 / 2e-60 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.014G097700.1 pacid=42764512 polypeptide=Potri.014G097700.1.p locus=Potri.014G097700 ID=Potri.014G097700.1.v4.1 annot-version=v4.1 ATGTCCATTAAATTCCTTCCACCACTCCGTCTCCTTAACCCATCTCCTCCCGTAACCCGTTTCCCTCTCATGAATGTCGGACTCTCCATAAATACCCGTC GGTCCATACCCATTTTCTCTCGGGTCTTCCCTTTTAAGCTCAAGTACCCAGGGTTTTCTTCTCGGTTCTCCACCCGTTCATTTCGACCTGGAACAACCGG GTCGAGACCCGAATTCACCCGCCGCACTGGTGCTGAACGAGAGAGAGGAGAGGCTAGGACTTCCAAGAGTTTAGTTGAAGACGAGGCCGAACTCAGTGAT TGGGTTAGTGACTTGAGGACCAACTCGTTCCGTGGCCGAGTCACTAGCGAAGACGAGTCAGATTCTGATATGGGTCGTCATAACAGAAGTAAGAGGGGCC CTGGTAGAGATAGAGATAGCGGTAGCAATAGAGGTGGAGGTAGAGAGGGGTTTTCAATGAAGAGGAGAAGGGAGAGTGACTCAGACGAGTTTGGTGAGCC AACTCGAAGGAGAACTGAGTCGACGTTTGGTCCGCCGAGAAAGAACCGTGGAACTTTGGGTTTACAGAATGAGAAGAGAGGACAGGGAGAGAGGGATTTA TGGCTTAAGAGAGATGATAAAGGAGTAAAAGGTGAAAGGGGTTTTATTGACGATGATGATGATGAGGTGGACGATGGTGAGGACGAGAGAAAGGGGTTAA TGCGTAATCTTGGGGGTTTGGTAACCGAGGAAGAGAGTGACGACGACGACGACGGAGATAATGGTAATGGCATTTTTGAGAAAAATGCACTGTCTTCTAC TGGTTTGAAGAAGGAATTTGATATGAAAGATAGGCCAAGTTTGTCTTCGAGTTCTGATTCTTTTATGAGCGAGACTAGATTTGATCAATGTTCAATTTCC CCCTTGTCATTAAAAGGAATCAAGGATGCTGGATACGAGAACATGACTGTGGTCCAGGCGGCAACACTTCCTGTTATAGTCAAAGGTAAGGATGTTCTGG CCAAGGCTAAAACAGGCACTGGAAAAACTGTGGCATTTTTGCTTCCATCAATTGAAGTTGTTGTAAAATCTCCTCCTCTTGATCGTGACCAAAAACGTCC CCCGATTATTGTTCTTGTCATATGCCCGACAAGGGAGCTTGCAACCCAAGCTGCCACTGAAGCAAATACTCTGTTGAAATATCACCCATCAATTGGTGTT CAAGTTGTGATAGGAGGGGTGAGAATTGCTTCAGAGCAAAGAAATCTGCAAGCAAACCCTTGCCAGATTCTTGTTGCTACACCTGGAAGACTCAAAGATC ATATTGAGAATACTGCAGGATTTGCAACGAGGCTGATGGGTGTGAAAGTCCTTGTACTTGATGAAGCTGATCGGTTGCTAGACATGGGATTTCGTAAAGA TATTGAGAAAATAATTGCTGCTATTCCAAAACAAAGACAAACACTCATGTTTTCTGCCACAGTTCCTGAAGAGGTTCGCCAAATCTGTCACGCTGCTTTG AAAAGAGATCATGAGTTCATCAATACAGTTGAAGAGGGAACTGAAGACACACATTCCAAGGTCAGACAGATGCATGTGATTGCTCCATTAGACAAGCAAT TTCCCCTTTTATATGTCATTCTGAAAGATCATATTGCAGATGACCCTGATTATAAGGTTATTGTCTTTTGTACTACTGCTAGGGTGACTGGACTGGTTGC TGGACTTCTTGGTGAATTGAACTTGAATATTAGAGAGATCCATTCTAGAAAGGCTCAGACATACAGGACCAGGGTTTCCAATGAGTTCCGGAAGTCAAGG GGCCTTATACTTGTGACTTCTGATGTATCTGCACGCGGAGTTGATTATCCAGATGTCACCCTTGTCCTACAGGTGGGGTTGCCTGCTAGTAGAGAACAGT ATATACATCGACTTGGTAGAACTGGGCGTAAAGGTAAAGAAGGGGAAGGTATTTTGTTGCTGGCACCTTGGGAGGAGTTCTTTTTATCTACCGTCAAGGA TCTGCCATTAACAAAAGCGCCAATGCCTTCAATAGACCCAGACACGAAGAAAAAGGTGGAACGGGCACTGTCCCAGTTAGACATGAATTCCAAACAGGCA GCATACCAGGCCTGGTTAGGTTATTACAATTCACAAAAGAAAGTGGGCAGTGACAAGTACAGGCTCGTGGAGCTTGCTAATGAGTTCAGCCGGAGTATGG GACTTGATACTCCTCCAGCCATTCCCAAGCTCGTCCTTGGGAAGATGGGCCTCAGGAATATTCCTGGCTTACGCACGAAGTAG
AA sequence Show only first row Show all	>Potri.014G097700.1 pacid=42764512 polypeptide=Potri.014G097700.1.p locus=Potri.014G097700 ID=Potri.014G097700.1.v4.1 annot-version=v4.1 MSIKFLPPLRLLNPSPPVTRFPLMNVGLSINTRRSIPIFSRVFPFKLKYPGFSSRFSTRSFRPGTTGSRPEFTRRTGAERERGEARTSKSLVEDEAELSD WVSDLRTNSFRGRVTSEDESDSDMGRHNRSKRGPGRDRDSGSNRGGGREGFSMKRRRESDSDEFGEPTRRRTESTFGPPRKNRGTLGLQNEKRGQGERDL WLKRDDKGVKGERGFIDDDDDEVDDGEDERKGLMRNLGGLVTEEESDDDDDGDNGNGIFEKNALSSTGLKKEFDMKDRPSLSSSSDSFMSETRFDQCSIS PLSLKGIKDAGYENMTVVQAATLPVIVKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPLDRDQKRPPIIVLVICPTRELATQAATEANTLLKYHPSIGV QVVIGGVRIASEQRNLQANPCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADRLLDMGFRKDIEKIIAAIPKQRQTLMFSATVPEEVRQICHAAL KRDHEFINTVEEGTEDTHSKVRQMHVIAPLDKQFPLLYVILKDHIADDPDYKVIVFCTTARVTGLVAGLLGELNLNIREIHSRKAQTYRTRVSNEFRKSR GLILVTSDVSARGVDYPDVTLVLQVGLPASREQYIHRLGRTGRKGKEGEGILLLAPWEEFFLSTVKDLPLTKAPMPSIDPDTKKKVERALSQLDMNSKQA AYQAWLGYYNSQKKVGSDKYRLVELANEFSRSMGLDTPPAIPKLVLGKMGLRNIPGLRTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	0	1
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	1.00	0.9861
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.010G136800 [exp]	2.00	0.9827
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.002G237400 [exp]	3.00	0.9693
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117100 [exp]	3.16	0.9715
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Potri.005G140800 [exp]	3.60	0.9657
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	3.87	0.9801
AT3G23020			Tetratricopeptide repeat (TPR)...		Potri.010G078900 [exp]	4.47	0.9683
AT3G18680			Amino acid kinase family prote...		Potri.005G057700 [exp]	5.29	0.9701
AT3G22690			unknown protein		Potri.013G044700 [exp]	6.32	0.9750
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	8.12	0.9713

Compare expression of checked genes

Potri.014G097700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.