Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53130 902 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G01340 901 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT4G01010 889 / 0 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT2G46430 871 / 0 CNGC3.C, ATCNGC3 cyclic nucleotide gated channel 3 (.1.2) AT5G57940 730 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT4G30560 725 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G23980 721 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G19780 706 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 693 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G24610 645 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G170000 [exp] 1281 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.015G019100 [exp] 915 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 910 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.018G106100 [exp] 734 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.001G043900 [exp] 685 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 683 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.009G010700 [exp] 661 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G097600 [exp] 644 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.017G067000 [exp] 621 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019014 [exp] 906 / 0 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 874 / 0 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10014925 [exp] 841 / 0 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10038815 [exp] 785 / 0 AT5G53130 971 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10036260 [exp] 705 / 0 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10041662 [exp] 693 / 0 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 692 / 0 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10022155 [exp] 683 / 0 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10015510 [exp] 671 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 659 / 0 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.014G097900.2 pacid=42764323 polypeptide=Potri.014G097900.2.p locus=Potri.014G097900 ID=Potri.014G097900.2.v4.1 annot-version=v4.1 ATGAATCTCAATGGAAATAAATTTGTCAGGTTTCAGGACTGGAGCTCAGAGAAATCCTTCAGTTCAGAGCAGCAATACTCCAATGAATATGGATTTTACG CAAGAAAAGCCAAACCAATTTTCTATTCAGTTTGGGATAATATCCGAAGAGGATGGGAGATGGGTTCAGAGAGGATTAGAAGCCTAAAGAAACCATTGCG ATTCTACTCTAAGGGTGCTCAGCCAGCGAAAGAACCAGGACCTAAAAGGAAGATTCTTGATCCGCAAGGTCCATTTCTCCAGAAATGGAACAAATTTTTT ATGCTTGTTTGCGTGCTTGCAGTGGCTATAGACCCCTTATTCTTTTACATTCCGTGGATTAAGAGCACTGAAAAAGATAAATGCCTTGATGTGGACCGTA AGATGCAAGCTGCTGCTTGCATTCTTCGTACACTCATTGATATCTTATACATACTTCGCATAGTCTTCCAATTCCGCACTGGGTTTATAGCCCCTTCTTC TCGCGTATTCGGAAGGGGTGAGTTGGTTGAGGATCCTAAAGCTATAGCCAAAAAATACGTGACCTCCTACTTTATCATTGATATTCTTGCAATTCTTCCG CTTCCTCAGGTAGTAGTTTTAATCATCCTTCCACGAGTGGATGGCCCGGTTTCACTGGCTGCAAAGAACTTATTTGAGTTTGTAATTTTCTCCCAATACA TACCAAGGCTTATTCGAATCTATCCACTCTTCAAAGAAATAAACAGAACTTCTGGCATACTTACTGAAACAGCATGGGCGGGAGCTGTTTTCAACCTCTT TCTCTACATGCTGGCCAGTCATGTAATTGGAGCCTTCTGGTACTTGTTCTCAATCGAACGACAAGATACTTGCTGGCATGAGGTGTGTAAGGACCAAGCA AGGTGTGATACCATGTATCGGTATTGTGGAGATCATCGTAAAAAAGACTACACATTCCCGACTGAATCATGCCCTTTTATCCAACCTGATCAAGTTCATA ACTCAACGGTCTTCAATTTTGGTATATTTATTGATGCTCTTGATTCTGGAGTGGTGGAATCTACTTATTTTCCACGGAAATTCTTCTACTGCTTTTGGTG GGGTTTGCGTAATCTCAGCTCTCTTGGCCAAAACCTTAAAACAAGCACTTTCATTGGGGAGATTCTCTTTGCCATCTTCATATCCATTGCTGGATTGGTT TTGTTTGCACTGCTTATTGGAAATATGCAGAAATATCTTGAATCCACAACTGTTAGAGTAGAGGAAATGCGGGTGAAGAGGAGAGACACAGATCATTGGA TGTCTCAACGAATGCTCCCTGATAACCTGAGGGAACGAATTAGGCGGTATGAACAGTACAAATGGCAAGAAACTAGAGGTGTGGAAGAGCGGGGTCTAAT TCGTAATCTTCCTAAAGATCTCAGGAGGGACATAAACCGCCATCTTTGCTTGGACCTGATCAAGAAAGTGCCGATGTTTAAAAAAATGGATGAGACAATA TTAGATGCGGTATGTGACCGTCTCAAGGCAGCTCTTTACACCAAGGATAGCTACATTGTTCGAGAAGGGGAACCAGTCGATGAGATGCTATTTATCATGA GAGGTAATCTAGTAAGTGTGACCACCAATGGTGGAAGAACTGGTTTTTTCAATGCTGTCTCTCTCAAGGCTGGTGACTTCTGTGGAGAAGGGTTACTTAC ATGGGCCCTGGATCCCCAATGCTCCTCCAACCTCCCTATCTCAACTAGAACGGTACAAGCTCTATCAGAGGTTGAGGCCTTTGCTCTAGAAGCTGATGAC TTGAAGTCTGTAGCTTCCCAGTTTCGCCAATTACATCACAAGGATATCCAGCACACATTCAGGTTCTTCTCAGTGCAGTGGAAGACATGGGCAGCGTGCT TCATACAGGCAGCATGGCGCCGTCACTGTAGGAGGAAGCAGGCTAAAAGCTTACGTCAAGCAGAAGAAAAACTGCAAGATTCTTTGGCAAACGAGGCCAG TACATCGCCAAGCCTAGGTGTTGCCATTTATGCATCACAGTTTGCTGCCAACGCATTAAGAAATCTGCGGCGGAAGGGCACACATGCCACTAGATTGCCA CAGAGACTGTCATTGCTGCCTCAGAAGCCAACGGAGCCTGATTTTTTTGCTCAACATCAAAAGTAA
AA sequence Show only first row Show all	>Potri.014G097900.2 pacid=42764323 polypeptide=Potri.014G097900.2.p locus=Potri.014G097900 ID=Potri.014G097900.2.v4.1 annot-version=v4.1 MNLNGNKFVRFQDWSSEKSFSSEQQYSNEYGFYARKAKPIFYSVWDNIRRGWEMGSERIRSLKKPLRFYSKGAQPAKEPGPKRKILDPQGPFLQKWNKFF MLVCVLAVAIDPLFFYIPWIKSTEKDKCLDVDRKMQAAACILRTLIDILYILRIVFQFRTGFIAPSSRVFGRGELVEDPKAIAKKYVTSYFIIDILAILP LPQVVVLIILPRVDGPVSLAAKNLFEFVIFSQYIPRLIRIYPLFKEINRTSGILTETAWAGAVFNLFLYMLASHVIGAFWYLFSIERQDTCWHEVCKDQA RCDTMYRYCGDHRKKDYTFPTESCPFIQPDQVHNSTVFNFGIFIDALDSGVVESTYFPRKFFYCFWWGLRNLSSLGQNLKTSTFIGEILFAIFISIAGLV LFALLIGNMQKYLESTTVRVEEMRVKRRDTDHWMSQRMLPDNLRERIRRYEQYKWQETRGVEERGLIRNLPKDLRRDINRHLCLDLIKKVPMFKKMDETI LDAVCDRLKAALYTKDSYIVREGEPVDEMLFIMRGNLVSVTTNGGRTGFFNAVSLKAGDFCGEGLLTWALDPQCSSNLPISTRTVQALSEVEAFALEADD LKSVASQFRQLHHKDIQHTFRFFSVQWKTWAACFIQAAWRRHCRRKQAKSLRQAEEKLQDSLANEASTSPSLGVAIYASQFAANALRNLRRKGTHATRLP QRLSLLPQKPTEPDFFAQHQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01340		ACBK1, ATCNGC10	cyclic nucleotide gated channe...		Potri.014G097900 [exp]	0	1
AT2G32030			Acyl-CoA N-acyltransferases (N...		Potri.010G085600 [exp]	1.00	0.9673
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G091500 [exp]	3.16	0.9645
AT1G35710			Protein kinase family protein ...		Potri.014G195200 [exp]	4.47	0.9513
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012700 [exp]	7.74	0.9366
AT4G19950			unknown protein		Potri.005G186200 [exp]	8.24	0.9538	ORF.5
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.004G012601 [exp]	8.71	0.9349
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Potri.015G069600 [exp]	9.48	0.9286	EDS1.2
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147400 [exp]	10.81	0.9239
AT3G01050		MUB1	membrane-anchored ubiquitin-fo...		Potri.017G090700 [exp]	11.66	0.9352
AT4G25800			Calmodulin-binding protein (.1...		Potri.013G010700 [exp]	11.95	0.9383

Compare expression of checked genes

Potri.014G097900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.