Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36000 369 / 5e-128 unknown protein AT3G61730 367 / 6e-127 RMF reduced male fertility (.1) AT3G62500 152 / 4e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165700 [exp] 40 / 0.0005 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012627 [exp] 399 / 3e-140 AT5G36000 337 / 5e-115 unknown protein Lus10030262 [exp] 350 / 1e-111 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10004013 [exp] 320 / 5e-110 AT5G36000 271 / 3e-90 unknown protein Lus10010122 [exp] 281 / 5e-93 AT5G36000 271 / 2e-88 unknown protein Lus10035747 [exp] 102 / 7e-26 AT5G36000 97 / 5e-24 unknown protein Lus10001172 [exp] 45 / 2e-05 AT5G48170 164 / 2e-52 SNEEZY, SLEEPY2, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G098300.2 pacid=42764081 polypeptide=Potri.014G098300.2.p locus=Potri.014G098300 ID=Potri.014G098300.2.v4.1 annot-version=v4.1 ATGGAAGAAGAGAGTTCACCGAGAAATATTGAGAAAATGAAAATGAGAAAGCGATTGAGAAGAGAATCTACGATTTGCAGTTGCAAATCTCCTAGTCTAC AAAACCAAAACTCTCGTTGCTCTTTCAATTGGTATGAAGTGGATCTATGGACAGAGGTAGCTAAGTTTTTGGACGGGAAGTCTCTGGTGAAGCTGGCTGC GACTTGCCGATGGTTCCACAGCGTCATCATGCATGACAGCGTATGGAAGTTTGCTTGTTTGCGTGATCTTCAAGTCCCAGCCCCATGCCATGTGGCATTC AAGTGGATCAAGCTCTATGGTTCACTAGCTGATGGGAGTCACTCGTACAAGTTCCGTGATAATGAGAAGCACATTGATTGGATGAGGATTGGCGCATTTT TCTTCGACTCCCAAGTAGCACTCTTGTCCGAGAGGCTCAGCCTGCCATTGAAAATAATTAACAAAGACAATGTGGAGAAGGCTCTGGAATCCAGTGGAGC TTGTCTGCTAAGTAACATCAAAAAAGGGATCTGGATAGCAGATCTCCAGCTTGTTCGATGCCCTGTTTGTGAACTTGATACATGTGAGGGAACAATGCAG ACACTAGAAGTAAGGAATATGGAGCTGTTTCTGTGTGACGGATACCAGAATGCGAGCTGGGACTATGAGCTGATTGGATCCTATAAAATCAACAAGTCTG TTGATGCAGCTTCTGGTGGCATTTTTGATCTCAAACACATCAAGGACCGCGCAATGGCTGGTGTGTTTAATCTCAAGTCATGGGCAGGAAAACCCAGTGA TATGCAGCCAAAGGCCATGATCACTTTCCATTCAGTTGCAATCCGCACCAATTTACAAGAAAATCAAGCAGGGCTTCTTACAAAGTACTACACGATGAGA GCTGGACCTGAAGGAGAAGTAGTTTCAATTAGAATCTCTCAGCAGCTTGCTTAG
AA sequence Show only first row Show all	>Potri.014G098300.2 pacid=42764081 polypeptide=Potri.014G098300.2.p locus=Potri.014G098300 ID=Potri.014G098300.2.v4.1 annot-version=v4.1 MEEESSPRNIEKMKMRKRLRRESTICSCKSPSLQNQNSRCSFNWYEVDLWTEVAKFLDGKSLVKLAATCRWFHSVIMHDSVWKFACLRDLQVPAPCHVAF KWIKLYGSLADGSHSYKFRDNEKHIDWMRIGAFFFDSQVALLSERLSLPLKIINKDNVEKALESSGACLLSNIKKGIWIADLQLVRCPVCELDTCEGTMQ TLEVRNMELFLCDGYQNASWDYELIGSYKINKSVDAASGGIFDLKHIKDRAMAGVFNLKSWAGKPSDMQPKAMITFHSVAIRTNLQENQAGLLTKYYTMR AGPEGEVVSIRISQQLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36000			unknown protein		Potri.014G098300 [exp]	0	1
					Potri.015G001700 [exp]	2.00	0.9490
AT5G14230			unknown protein		Potri.011G151300 [exp]	3.46	0.9304
AT1G13680			PLC-like phosphodiesterases su...		Potri.004G117500 [exp]	7.48	0.9249
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Potri.012G132600 [exp]	8.24	0.8771	Pt-MADS12.2
AT1G50140			P-loop containing nucleoside t...		Potri.007G069800 [exp]	9.32	0.8186
AT5G07500	C3HZnF	PEI1	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.001G080100 [exp]	9.48	0.8808
AT1G61330			FBD, F-box and Leucine Rich Re...		Potri.011G042900 [exp]	11.22	0.8761
AT3G47690		ATEB1A, ATEB1H2	ATEB1-HOMOLOG2, ARABIDOPSIS TH...		Potri.012G069400 [exp]	11.22	0.9127	Pt-ATEB1.3
AT2G46690			SAUR-like auxin-responsive pro...		Potri.015G006800 [exp]	13.56	0.8697
AT2G20430		RIC6	ROP-interactive CRIB motif-con...		Potri.002G035500 [exp]	16.43	0.8882

Compare expression of checked genes

Potri.014G098300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.