Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61750 401 / 3e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 229 / 3e-71 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G25290 107 / 1e-25 Auxin-responsive family protein (.1.2) AT5G47530 104 / 2e-24 Auxin-responsive family protein (.1) AT5G35735 103 / 3e-24 Auxin-responsive family protein (.1) AT4G12980 103 / 3e-24 Auxin-responsive family protein (.1) AT3G59070 103 / 5e-24 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 103 / 5e-24 Auxin-responsive family protein (.1) AT4G17280 100 / 3e-23 Auxin-responsive family protein (.1) AT5G54830 76 / 2e-14 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G197500 [exp] 238 / 6e-75 AT3G07570 402 / 7e-140 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.002G249300 [exp] 116 / 9e-29 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.006G015000 [exp] 113 / 1e-27 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 112 / 3e-27 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 112 / 3e-27 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.014G161700 [exp] 110 / 1e-26 AT2G04850 577 / 0.0 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 108 / 7e-26 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 108 / 8e-26 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 107 / 2e-25 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012625 [exp] 488 / 7e-172 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10010120 [exp] 416 / 5e-145 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10016080 [exp] 227 / 2e-70 AT3G07570 397 / 9e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001180 [exp] 208 / 5e-63 AT3G07570 377 / 5e-130 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10025877 [exp] 121 / 5e-31 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10001736 [exp] 120 / 8e-30 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10001162 [exp] 117 / 9e-29 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10038225 [exp] 110 / 9e-28 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10012305 [exp] 107 / 2e-26 AT3G07570 165 / 8e-49 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012350 [exp] 108 / 8e-26 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF03188 [poplar] [flax] Cytochrom_B561 Eukaryotic cytochrome b561 CL0559 [poplar] [flax] CBD9-like PF03351 [poplar] [flax] DOMON DOMON domain
Representative CDS sequence Show only first row Show all	>Potri.014G098700.1 pacid=42763341 polypeptide=Potri.014G098700.1.p locus=Potri.014G098700 ID=Potri.014G098700.1.v4.1 annot-version=v4.1 ATGGCAAATTCAAGATTTCAAAAATCGAGGCTTGTGTTTGTTTTATTATGCTTCTTGTTTTTTGTCTCGAGACTCAGGATCTTCGTGGCTGCTGATGATA AGTCAAATGAATCTAACAAAGATGATGGTTATGATTTTGCAGTCACAGAAGAAGATCAGATTGGTGACAATAGCACTATTAGTGGTGGTGCTTATGCTGC CCCTAATGGTGTTGCGATGGATCAGGAAAGATCCGAGCTTTGCAACACCGATATGAGTAGTTTTCTTCCTCCACCATATAATAACATATCAAATATGGTC TGCAAACCAGTTTGGAATACTTTTCTGTTGAGGTATCACAAGAAAGAAGATAATGTGGTGACTTTTATATTATCTGCTGTATACACAATCGGATGGGTGG CAATGGGGTTTTCGAAAGATGGAAGGATGGTTGGATCCAGTGCTATGGTGGGCTGGTTCAATAGGAAAGGTCAGGCGAGAATCAAAGAGTATTACTTGCA AGGTACTAGGCCATCACAGGTCATAGAGGATGCAGGTGAATTGGACCTCACAAAGGTTCCACCTGCTGTTGTGATTAATGGGGCTATGATTTACTTGGCA TTTCAAGCCAAGTTTGAAAAACCTCTCGCTTCCCAGCCAATCATATTGGCTTTCGGAACCAGGTATCCAAATCACTACCGCCTATCCTCGCACGATGACA AGACAGCTATTCTTTTCGACTTCACTGCAGGTTCTGCGTCTAGAGCACGTATAAATCCTGGGCAGATGAAGAAGAATCACGGGGTATTAGGAACCTTGGC ATGGGGTCTATTCCTTCCTAGTGGGGCAATTGTTGCAAGGTATTTGAAGCATAAAGAACCACTCTGGTATTATCTACATGCTGGTATTCAGTTTTTGGGA TTTCTCTTGGGGCTTGCCAATGTGGTTCTTGGACAGCAACTCTATAGCAAGATTGATGCCAATGTACCATCACACAGAGGCATAGGCATCTTTGCTCTCA CTCTTAGTATTCTTCAGATATTGGCGTTCTTTTTAAGGCCTAAGAAAGATGCCAAGATCCGCAAGTACTGGAATTGGTACCACCACTGGTTTGGAAGGAT TGCCCTCTTCTTTGGAGTCTTCAATATAGTGTGGGGAATCCATCTAGGAGCTGCAGGGACGTCATGGAAGATAGGCTTTGGTTTTCTAATTACTATGATT CTAGTCACAGTTATTATTCTCGAAACGTTGACATGGTTGAGGAGATCAGAGAAGACTACTCCACCTGAAACCTTCCAAATGAATCCAATTTAG
AA sequence Show only first row Show all	>Potri.014G098700.1 pacid=42763341 polypeptide=Potri.014G098700.1.p locus=Potri.014G098700 ID=Potri.014G098700.1.v4.1 annot-version=v4.1 MANSRFQKSRLVFVLLCFLFFVSRLRIFVAADDKSNESNKDDGYDFAVTEEDQIGDNSTISGGAYAAPNGVAMDQERSELCNTDMSSFLPPPYNNISNMV CKPVWNTFLLRYHKKEDNVVTFILSAVYTIGWVAMGFSKDGRMVGSSAMVGWFNRKGQARIKEYYLQGTRPSQVIEDAGELDLTKVPPAVVINGAMIYLA FQAKFEKPLASQPIILAFGTRYPNHYRLSSHDDKTAILFDFTAGSASRARINPGQMKKNHGVLGTLAWGLFLPSGAIVARYLKHKEPLWYYLHAGIQFLG FLLGLANVVLGQQLYSKIDANVPSHRGIGIFALTLSILQILAFFLRPKKDAKIRKYWNWYHHWFGRIALFFGVFNIVWGIHLGAAGTSWKIGFGFLITMI LVTVIILETLTWLRRSEKTTPPETFQMNPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61750			Cytochrome b561/ferric reducta...		Potri.014G098700 [exp]	0	1
AT2G41610			unknown protein		Potri.014G108300 [exp]	1.41	0.9667
AT5G50420			O-fucosyltransferase family pr...		Potri.003G073500 [exp]	2.00	0.9528	FUT13.1
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Potri.006G033300 [exp]	3.00	0.9551	C3H1,CYP98.1
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	3.16	0.9554
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.008G094800 [exp]	3.46	0.9501
AT1G04750		ATVAMP7B, ATVAM...	VESICLE-ASSOCIATED MEMBRANE PR...		Potri.003G177700 [exp]	3.87	0.9502	SAR1.5
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.016G086400 [exp]	4.00	0.9466
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	5.29	0.9475	Pt-CESA2.1
AT1G07120			unknown protein		Potri.001G279000 [exp]	5.83	0.9306
AT5G55970			RING/U-box superfamily protein...		Potri.011G094800 [exp]	7.74	0.9269

Compare expression of checked genes

Potri.014G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.