Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46500 784 / 0 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT5G24240 684 / 0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT1G64460 451 / 1e-156 Protein kinase superfamily protein (.1) AT2G03890 215 / 2e-61 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G13640 212 / 1e-60 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT1G26270 205 / 5e-58 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G40850 196 / 3e-55 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT3G56600 195 / 5e-55 Protein kinase superfamily protein (.1.2) AT1G64470 176 / 2e-51 Ubiquitin-like superfamily protein (.1) AT1G27570 109 / 8e-25 phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014600 [exp] 781 / 0 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.001G090300 [exp] 761 / 0 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.015G013600 [exp] 740 / 0 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.010G137400 [exp] 215 / 2e-61 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.008G112200 [exp] 211 / 4e-60 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.017G101500 [exp] 202 / 3e-57 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 201 / 5e-57 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.002G171400 [exp] 100 / 2e-25 AT1G64460 86 / 6e-22 Protein kinase superfamily protein (.1) Potri.011G026600 [exp] 78 / 5e-16 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022411 [exp] 767 / 0 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10018104 [exp] 728 / 0 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10001817 [exp] 702 / 0 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10003190 [exp] 639 / 0 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10030251 [exp] 512 / 2e-180 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10004005 [exp] 512 / 3e-180 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10036834 [exp] 214 / 4e-61 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10019197 [exp] 211 / 5e-60 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 196 / 1e-54 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10018367 [exp] 78 / 6e-16 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Potri.014G099000.1 pacid=42763158 polypeptide=Potri.014G099000.1.p locus=Potri.014G099000 ID=Potri.014G099000.1.v4.1 annot-version=v4.1 ATGTCTTCAGGTGTGGCTTTAAGTCCAATTCAAAGTGAACCTGCTCTTTCCTTTAATTGCATGAGTGGGAAACCGGTTCCGTCCCCTGATGAGTCGATTT TGATTTATCTCTCTGTTTCGGGATCTGTAATGCCAATGCGGGTGCTAAAGTCTGATTCTATTGAATCCGTGAAGTTACGGATTCAATCTTATAAGGGGTT TGTTGTAAAGAACCAAAAATTGGTGTGTGGAGGCCGGGAGCTTGCCCGGAGCAATTCCCTTGTTCGTGATTATGGGGTCACGGATGGGAATGTTCTGCAT TTGGTTCTTAGGCTTTCGGATCTTCAGGTTATAAATGTTAGGACTACAAGTGGGAAACAGTTGACATTTTATGTGGAGCGAGGGAGGGATGTTGGATATG TGAAGCAACAGATTGCAAAGAAAGAGAAGGAATTTGATGATCTTGATGAGCAAGAGGTTGTTTGCGAGGGGGAGCCGCTTGAGGATCAAAGACTGATTGA TGATGTATGTAGATATAATAATAATAACAATGATGCAGCAATTCATTTGTTAGTGAGGAAATCATCAAAAGTTAGGGCTAGGCCCGTGGAGAAGAATTTT GAATTGGATATTGTCGCGTCAAGATTGAATGATAGAGAGAATGTTAGCAGACAATATGACACTAGTGAAGAGAATGATAGGAGAGGTTATGAAGTTGATA GAGGGATTGTACCGAGAAAGCCTCCTGATAGGGATTTTTCATTGGAGCCAATTATTGTTAATCCCAAAATTGAATTTCCCTCTGCAATCTGGGATATGGT TAATGCTACCATTGATGGATTGGATGTTGGATTTGACCCGATCAGGTCTATGGAGGGTACAGGAGGGGCTTATTTCATGCAGGATTCATATGGAGCGAGG TTTGTTTCTGTTTTTAAGCCACTTGACGAGGAACCTATGGCTGTGAACAACCCTCGAGGGCTGCCATTGTCTTCAGATGGTGAAGGTTTGAAAAAAGGTA CAAGAGTTGGAGAAGGAGCTTTCAGGGAAGTTGCAGCTTACATTCTGGATCATCCAGAGAGTGGACGCAGATCTTTGTTTGGTGGAAGTAAGGGCTTTGC TGGGGTCCCGTCTACACTTATGATCAAGTGCTTGCACAAAGGTTTCAACCATCCAGAAGGTGTAACCATCAAGATTGGGTCCCTGCAGATGTTTATGGAG AACAATGGAAGCTGTGAGGATATGGGACCTGGGGCTTTCCCATTGAAGGAAGTCCATAAAATCTCTGTATTGGATATTAGGATGGCCAACGCAGATAGGC ATGCTGGGAATATTTTGTTGGGCAAAGATCAAGAAGATGGCCAGACTGTGCTGATTCCAATTGATCATGGATATTGCTTGCCTGAAAGTTTTGAAGACTG CACATTTGAATGGCTTTATTGGCCCCAAGCTCGTCAACCTTATGACTCCAAGACCATTGACTACATAAAATCACTGGATGCTGAAGAGGATATCGCCCTT CTGAAGTTTCATGGATGGGACATGCCAGTTGAATGTGCACGCACTCTCCGCATATCCACCATGCTCCTGAAGAAAGGAGTGGAGAGGGGGCTCACCCCTT TTGCCATTGGAAGTATAATGTGCAGAGAGACCTTGAAGAAGGAATCTATTATTGAGGAGATTGTCCAAGAAGCACAGGATTCCACGCTTCCCATAACAAG TGAAGCTCTATTCCTTGAAACAGTATCACATATCATGGATCGCCGCCTTGATGAGATTGCTGAATTAAATTTCTGA
AA sequence Show only first row Show all	>Potri.014G099000.1 pacid=42763158 polypeptide=Potri.014G099000.1.p locus=Potri.014G099000 ID=Potri.014G099000.1.v4.1 annot-version=v4.1 MSSGVALSPIQSEPALSFNCMSGKPVPSPDESILIYLSVSGSVMPMRVLKSDSIESVKLRIQSYKGFVVKNQKLVCGGRELARSNSLVRDYGVTDGNVLH LVLRLSDLQVINVRTTSGKQLTFYVERGRDVGYVKQQIAKKEKEFDDLDEQEVVCEGEPLEDQRLIDDVCRYNNNNNDAAIHLLVRKSSKVRARPVEKNF ELDIVASRLNDRENVSRQYDTSEENDRRGYEVDRGIVPRKPPDRDFSLEPIIVNPKIEFPSAIWDMVNATIDGLDVGFDPIRSMEGTGGAYFMQDSYGAR FVSVFKPLDEEPMAVNNPRGLPLSSDGEGLKKGTRVGEGAFREVAAYILDHPESGRRSLFGGSKGFAGVPSTLMIKCLHKGFNHPEGVTIKIGSLQMFME NNGSCEDMGPGAFPLKEVHKISVLDIRMANADRHAGNILLGKDQEDGQTVLIPIDHGYCLPESFEDCTFEWLYWPQARQPYDSKTIDYIKSLDAEEDIAL LKFHGWDMPVECARTLRISTMLLKKGVERGLTPFAIGSIMCRETLKKESIIEEIVQEAQDSTLPITSEALFLETVSHIMDRRLDEIAELNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.014G099000 [exp]	0	1
AT5G42050			DCD (Development and Cell Deat...		Potri.003G141900 [exp]	7.74	0.7466
AT3G11320			Nucleotide-sugar transporter f...		Potri.010G194100 [exp]	12.24	0.7133
AT1G76140			Prolyl oligopeptidase family p...		Potri.005G247400 [exp]	12.48	0.7015
AT3G62260			Protein phosphatase 2C family ...		Potri.014G115500 [exp]	12.76	0.7493
AT5G65300			unknown protein		Potri.007G097000 [exp]	17.88	0.7275
AT1G54610			Protein kinase superfamily pro...		Potri.005G045500 [exp]	19.36	0.6473
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.014G100800 [exp]	23.32	0.7380	MYB201
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.004G035800 [exp]	31.84	0.7153
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Potri.006G052900 [exp]	48.66	0.6002	CPK14.1
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Potri.010G188600 [exp]	58.86	0.6864

Compare expression of checked genes

Potri.014G099000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.