Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61780 805 / 0 EMB1703 embryo defective 1703 (.1) AT5G28400 417 / 3e-128 unknown protein AT5G28320 343 / 1e-101 unknown protein AT4G15820 72 / 9e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G222000 [exp] 78 / 2e-14 AT4G15820 156 / 7e-42 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004004 [exp] 729 / 0 AT3G61780 671 / 0.0 embryo defective 1703 (.1) Lus10030250 [exp] 136 / 3e-37 AT3G61780 117 / 8e-32 embryo defective 1703 (.1) Lus10034169 [exp] 67 / 8e-11 AT4G15820 204 / 2e-59 unknown protein Lus10043415 [exp] 61 / 4e-09 AT4G15820 199 / 9e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G099100.2 pacid=42762986 polypeptide=Potri.014G099100.2.p locus=Potri.014G099100 ID=Potri.014G099100.2.v4.1 annot-version=v4.1 ATGGAGCTTCTAAATCCTCCCCTTCCAAACAAACCTCTAGTTTTCTCTTCCACTTCCCTCTTCACTCCTAAATTCTCCATCAAAATTTGCAACACCAAAA CCCCTTCCAAATTCCTCTCAATTCCATTCTGTTTACCGTTCTCTACCACCAGAAGAATCTTTCATGTTTCAGCTCATTTTGGTCGACCCGCTGGTAATCG CAGAAACTCACTTAGGAAAAAGCTCATTGATGGTCAACAGGTGCGTGAAAAGACTACTACTTTTCAAAATCATAGCTATGGTTTTGAGAACTCAGAATTT AGCTTTGATAATGGAAATAATTCTGTTGAGAATTTGGATCGTGTTAGTGTAAAAGAGAGTGATTTTGGTAATGGGTTTGATGTTGATAAATCAGACAGTT TAATAGGAGGGCAAAACAAATTGGAAAAAATGGGTGATTCTGTTTTGCTGAGTAAGTTGGACAAGTGGGTCGATCAGTATAGTAAAGATACCGCGTATTG GGGTACTGGGTCTGCTCCCATTTTCACTGTTTTTCATGATTTAGAAGGGAATGTGAAGAGGGTTTTAGTTAACGAGGATGAGATTTTAAAGAGAAGCGGA AATGAGAAGCGAGAAGTTGGGGATTTGACGGAGGAGAATTCAAAAATCTTGTATGCGAAAGGTTTAGCTAGAGAGATGGAGAGGGGTGGAAATGTGATTC CTAGGAATAGTTCTGTTGCCAAGTTTGTTGTTGATAGGGTGGAGTCTCGGTTTTTTAACAGAATTCATGGTGTTGTTCATCAACAGGAGTTTATTCCTGT GGTCTCGAGAGTTGGGACGATGGTGTTTTGTGGTTTTGTTGCGATTTGGGCTGTGAAGAAGTTATTCAGTTTTGGAAATAAGGAGGAGCAATGCACGGAG TTGGAAAAGGAAATGATGAGGAGAAAGATGAAGTCTAGAAAGGAGAGAGAGATGTTGGAGAAGGGTAGAGTTGGAGTTGTTCAAGAATCTTTGGAACCAC CAATGGTGTTGACGGAAAGGCCTAAGCTGGATAAGCAAGAATTGATGAAAAATATATTCAAAGCAAAGGCAGCGTCAAAAAATGAATTGCTTTTGGTGGA TTCTTCTAATTCTCAAACTACTAATGCAATGGATTTTGATCGTGAAATCCAGACAATTAGGGAAATGGCAAAGCAAGTCCGGGAGAGTGAAACTAGAGAA CTCAACAAGGGTATGGAAGAAAAGCAACCTGTGAATGAGGAGCCATTCAGTGAGATGCAGATAGTTGAAGAGCACAAAGAGGTTGCAAGTTTTCCTAGTG AAACTCATAATAAAGATTCAGTAGACAGAAGGGATGTGGATGTAATTATAGTGAAGAAAAAATTAAATGAAACGGAGAGTGATGATACTGGATACCATCC TAAGCTATCTGCTGAAGAGAACAAGGTCATGCAAGAATCTGGCACTTCAAGTATAAATTTTTCAGATGACAGGGAAACAATGGTCCGTGGAGATGTTATC CATTCTTTTGTTCCTGATGGTGATTCATGCAAGTCAAATAACAGGTCTATTAGGCCAAAACCAAGGGTTATACGGTCTGTCAAAGAAGCTAGGGAGTTTC TTGCCAAAAAAGGTGTCAAACATATCCAAGAACCACAATTTATTGCAGTGCAGGAAAGTACTTCTGTGTTGGGGATTCCTGATGACGAAGAATTCAGTGG GAAAACAAGCCGAAGAGGGGCAGTGGAAGAAAAGGTGTCTGAACCAATCATTTCAGGCAGAATATCAGAGTCTGGGCCTGCTGCAAATGCATGTGAAGAC TTAACTCGTAAGGAGAAGGAATTTGTTCCAGCCAAGAATGACAATTCCAAGAACCAACAGGGAGTGCATGATCTTCAAAAGCCCAGAACTTCCTTAAACC ACGGCATTAATGGCAGCATTACAGAGAGAAGACAGTCTGTAGGGACAGAAAACTGGATCGAGAAAAATTTTGACGAAGTTGAACCCATAGTAAAGAAGAT TGGGGAGGGATTTAGGGAAAACTACAAGGTTGCGAAAGAGATAGCAAGTCAACACCCGAATTCAAGTATTGATATAACACAGCTTGAGTATAGTCAAAAT GATAATGAACTCGAGTGGATGAAAGATGATGGTCTTAGAGACATTGTTTTTCGAGTTAGAGAAAACGAGTTAGCGGGGCGAGATCCATTTTATCAGATGG ATGCTGAAGACAAACTTAAATTCTTCAAAGGTCTTGAGAAGAAAGTTGAGAAAGAGAATGAAAAGTTGGTTCAAGTGCATGAATATCTCCACTCAAGCAT TGAAAATCTTGATTATGGAGCAGATGGTATCAGCTTATATGATTCCCCAGAAAAAATTATACCAAGATGGAAAGGGCCACCGTTAGAGAAGAATCCTCAG TTCCTTAACAACTTCCTTGAACAACAGAATGCAATTGCCGCCACAAATGCTGGTACGTCTTACCCTGTGAAGAAAGACGAAGACAACTTACTTCAGAAAT CAAATAAATCATCAGTTGATGAGAGTGTTGGCACTTCTTTGCCAAACTATGCTTCAAAGAAGTTAAGCTGCATGGATTCAAAAAACTCAAAGGTAGTTAT AGAAGGAAGTGATGGCTCTGTTAGATCTGGTAAAAAATCAGGAAAGGAATATTGGCAACACACGAAGAAATGGTCTCGTGGGTTCTTGGAATCTTATAAT GCAGAGTCAGATCCAGAAGTTAAATCTACTATGAAGGATATTGGGAAGGATTTGGATCGATGGATAACTGAAGAGGAAATACAGGAAGCAGCTGATCTGA TGACCAAACTACCAGAAAGAAATAAGTTAATAGAAAAGAAAATCACCAAGCTAAAAAGAGAAATGGAATTGTTTGGACCACAAGCTGTGGTGAGCAAGTA CCGTGAATATGCAGAAGAGAAAGAAGAAGATTACTTATGGTGGTTAGATCTTCCACATGTTCTGTGCATTGAATTATACACAATTGAAAATGGGGAGCAG AAAATAGGATTTTATTCATTGGAGATGGCTGCAGATCTTGAATTGGAACCAAAACCATGTCACGTGATCGCATTTGAGGATGCTGGTGATTGCAAAAACC TTTGTTGCATTATTCAGGCTCACATGGATATGGTTGGAACTGGCCATGCCTTTGTGGTTCCAAGGCCACCCAAGGATGCCTTTCGGGAAGCCAAAGCAAA TGGTTTTGGCGTTACTGTCATCAGGAAAGGGGAGCTACAGCTGAATGTTGACCAGATGCTAGAAGAGGTTGAAGAACAAGTTGCTGAAATTGGTAGCAAG ATATACCATGACAAGCTCATGGGAGAGCGATCTGTCGATATAAACTCGCTAATGAAAGGTGTCTTAGGTGTTGGTGGCCAAGCAACCAGGTCAAGAAGGA GAAGGTCGAAGCGAAAGCTGAGGAAGCCTGGCAAGAAATGA
AA sequence Show only first row Show all	>Potri.014G099100.2 pacid=42762986 polypeptide=Potri.014G099100.2.p locus=Potri.014G099100 ID=Potri.014G099100.2.v4.1 annot-version=v4.1 MELLNPPLPNKPLVFSSTSLFTPKFSIKICNTKTPSKFLSIPFCLPFSTTRRIFHVSAHFGRPAGNRRNSLRKKLIDGQQVREKTTTFQNHSYGFENSEF SFDNGNNSVENLDRVSVKESDFGNGFDVDKSDSLIGGQNKLEKMGDSVLLSKLDKWVDQYSKDTAYWGTGSAPIFTVFHDLEGNVKRVLVNEDEILKRSG NEKREVGDLTEENSKILYAKGLAREMERGGNVIPRNSSVAKFVVDRVESRFFNRIHGVVHQQEFIPVVSRVGTMVFCGFVAIWAVKKLFSFGNKEEQCTE LEKEMMRRKMKSRKEREMLEKGRVGVVQESLEPPMVLTERPKLDKQELMKNIFKAKAASKNELLLVDSSNSQTTNAMDFDREIQTIREMAKQVRESETRE LNKGMEEKQPVNEEPFSEMQIVEEHKEVASFPSETHNKDSVDRRDVDVIIVKKKLNETESDDTGYHPKLSAEENKVMQESGTSSINFSDDRETMVRGDVI HSFVPDGDSCKSNNRSIRPKPRVIRSVKEAREFLAKKGVKHIQEPQFIAVQESTSVLGIPDDEEFSGKTSRRGAVEEKVSEPIISGRISESGPAANACED LTRKEKEFVPAKNDNSKNQQGVHDLQKPRTSLNHGINGSITERRQSVGTENWIEKNFDEVEPIVKKIGEGFRENYKVAKEIASQHPNSSIDITQLEYSQN DNELEWMKDDGLRDIVFRVRENELAGRDPFYQMDAEDKLKFFKGLEKKVEKENEKLVQVHEYLHSSIENLDYGADGISLYDSPEKIIPRWKGPPLEKNPQ FLNNFLEQQNAIAATNAGTSYPVKKDEDNLLQKSNKSSVDESVGTSLPNYASKKLSCMDSKNSKVVIEGSDGSVRSGKKSGKEYWQHTKKWSRGFLESYN AESDPEVKSTMKDIGKDLDRWITEEEIQEAADLMTKLPERNKLIEKKITKLKREMELFGPQAVVSKYREYAEEKEEDYLWWLDLPHVLCIELYTIENGEQ KIGFYSLEMAADLELEPKPCHVIAFEDAGDCKNLCCIIQAHMDMVGTGHAFVVPRPPKDAFREAKANGFGVTVIRKGELQLNVDQMLEEVEEQVAEIGSK IYHDKLMGERSVDINSLMKGVLGVGGQATRSRRRRSKRKLRKPGKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	0	1
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	1.00	0.9432
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	3.46	0.9166
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	4.47	0.9088
AT1G74350			Intron maturase, type II famil...		Potri.005G063750 [exp]	5.47	0.9120
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	6.00	0.9076
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	7.00	0.9065
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.009G113500 [exp]	7.48	0.9096
AT5G15270			RNA-binding KH domain-containi...		Potri.017G114400 [exp]	8.24	0.8783
AT3G47840			Tetratricopeptide repeat (TPR)...		Potri.007G021700 [exp]	8.36	0.9025
AT5G04050			RNA-directed DNA polymerase (r...		Potri.006G043650 [exp]	8.77	0.8937

Compare expression of checked genes

Potri.014G099100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.