Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61790 550 / 0 Protein with RING/U-box and TRAF-like domains (.1) AT4G27880 523 / 0 Protein with RING/U-box and TRAF-like domains (.1) AT3G58040 454 / 4e-162 SINAT2 seven in absentia of Arabidopsis 2 (.1) AT2G41980 451 / 1e-160 Protein with RING/U-box and TRAF-like domains (.1) AT5G53360 410 / 1e-145 TRAF-like superfamily protein (.1) AT3G13672 226 / 2e-73 TRAF-like superfamily protein (.1.2) AT5G37870 101 / 1e-24 Protein with RING/U-box and TRAF-like domains (.1) AT5G37930 99 / 2e-23 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 95 / 2e-22 Protein with RING/U-box and TRAF-like domains (.1) AT5G62800 92 / 1e-20 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171500 [exp] 613 / 0 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.015G013000 [exp] 561 / 0 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.012G015500 [exp] 560 / 0 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G198600 [exp] 476 / 2e-170 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 476 / 2e-170 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.016G059700 [exp] 466 / 6e-167 AT3G58040 548 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.006G194100 [exp] 465 / 2e-166 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.001G026200 [exp] 451 / 7e-161 AT3G61790 450 / 2e-160 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G215400 [exp] 432 / 2e-153 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022405 [exp] 545 / 0 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 543 / 0 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10030248 [exp] 527 / 0 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10004001 [exp] 522 / 0 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10002761 [exp] 465 / 1e-165 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 461 / 1e-163 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10039202 [exp] 450 / 3e-160 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10013739 [exp] 446 / 1e-158 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10009111 [exp] 58 / 2e-09 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 57 / 2e-09 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF03145 [poplar] [flax] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Potri.014G099200.1 pacid=42764222 polypeptide=Potri.014G099200.1.p locus=Potri.014G099200 ID=Potri.014G099200.1.v4.1 annot-version=v4.1 ATGGAATTGGATAGCATTGAATGTGTGCCATCCTCAGATTTAACAGATGAGGATGAGATCCACCACCACCACCATCTCCATCATTTCCCTTCTGTTTCAA AGCCACACACCACCACCACCACCACCAATAATAATAACAATAACAATACTAATACTGTGGCTTCTTCTTTTCACTCCACTAGTGTTCATGAGCTCCTTGA ATGCCCTGTTTGTACCAATTCTATGTACCCTCCTATTCATCAGTGCCACAATGGCCATACACTCTGTTCAACCTGTAAAACACGAGTACACAATCGGTGT CCCACTTGTAGACAGGAGCTTGGTGACATTAGATGTCTAGCTTTGGAAAAAGTAGCTGAATCACTCGAGCTACCTTGCAAATACATGTCACTTGGATGCC CAGAGATTTTTCCATACTACAGTAAACTAAAACATGAGAACTTGTGCAATTTTAGGCCATACAACTGTCCATATGCTGGATCAGAGTGTGTTATTGTTGG GGATATCCCATTCCTTGTTACTCATCTGAGGGATGATCACAAAGTGGACATGCATTCTGGGTGTACTTTCAACCATCGCTATGTCAAGTCTAATCCTCGT GAAGTAGAAAATGCAACATGGATGTTAACAGTTTTCCACTGTTTTGGCCAGTATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGGATGGCTCCTGTTT ATATGGCATTCCTCAGATTCATGGGTGATGAGACAGAAGCTCGGAATTACAGCTACAGCCTGGAGGTTGGGGGAAATGGTCGGAAACTTATTTGGGAAGG CATGCCACGGAGTATAAGAGATAGCCACAGGAAGGTTAGGGACAGCCATGATGGACTTGTTATACAACGTAACATGGCACTTTTCTTCTCTGGAGGAGAT AGGAAGGAGTTAAAGCTGCGAGTTACAGGACGGATATGGAAAGAACAGCAGAACCCAGAAGGTGGGGCATGCATTCCCAACCTTTGTAGTTAG
AA sequence Show only first row Show all	>Potri.014G099200.1 pacid=42764222 polypeptide=Potri.014G099200.1.p locus=Potri.014G099200 ID=Potri.014G099200.1.v4.1 annot-version=v4.1 MELDSIECVPSSDLTDEDEIHHHHHLHHFPSVSKPHTTTTTTNNNNNNNTNTVASSFHSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRC PTCRQELGDIRCLALEKVAESLELPCKYMSLGCPEIFPYYSKLKHENLCNFRPYNCPYAGSECVIVGDIPFLVTHLRDDHKVDMHSGCTFNHRYVKSNPR EVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYSYSLEVGGNGRKLIWEGMPRSIRDSHRKVRDSHDGLVIQRNMALFFSGGD RKELKLRVTGRIWKEQQNPEGGACIPNLCS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61790			Protein with RING/U-box and TR...		Potri.014G099200 [exp]	0	1
AT5G53340			Galactosyltransferase family p...		Potri.003G136000 [exp]	5.56	0.9202
AT3G45850			P-loop containing nucleoside t...		Potri.009G026000 [exp]	6.48	0.9122
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	6.92	0.9102	ARAC2.1
AT2G14045			unknown protein		Potri.019G014100 [exp]	10.95	0.9011
AT3G51580			unknown protein		Potri.016G136900 [exp]	11.40	0.8749
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.008G006500 [exp]	12.04	0.9073
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	12.16	0.9075
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.001G292900 [exp]	14.14	0.8783
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.002G118000 [exp]	14.24	0.9010
AT3G12955			SAUR-like auxin-responsive pro...		Potri.011G143400 [exp]	15.87	0.8781	SAUR5

Compare expression of checked genes

Potri.014G099200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.