Plant FIBer expression Database

Potri.014G099300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61800 638 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G171600
[exp]
1053 / 0 AT3G61800 623 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030247
[exp]
773 / 0 AT3G61800 642 / 0.0 unknown protein
Lus10004000
[exp]
761 / 0 AT3G61800 650 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09740 DUF2043 Uncharacterized conserved protein (DUF2043)
Representative CDS sequence
>Potri.014G099300.1 pacid=42764027 polypeptide=Potri.014G099300.1.p locus=Potri.014G099300 ID=Potri.014G099300.1.v4.1 annot-version=v4.1
ATGTACGAAATAAGAGAGATAACTGGAGCGAGTTTTCAAAATTATGTTTGCTTGATTAATTACTTCGCTGCGGGATTAATGGAGATGGAAGAGGGTGGAG
GAAAGGCGAGGGCGTTGATAGAAAAGGCCACCAATTCCACGGCGGCGCTCGTCGACCCCCGCCTCCTCAAAGCCATCAAAACGGTTGTCCGATACTCTGA
CTCGGAGCTCCGACTCGCCGCCCAAACCCTATTGGATCTCATGAAACGCGACCACTCTCAGGTTAGGTATTTGACGCTTCTAATAATTGATGAGCTATTT
ATGCGATCAAAGCTATTTAGAACTCTAGTTGTTGAGAATTTAGATCAGTTGTTAAGTTTGAGCGTGGGATTTAGAAGAAACCATCCCCTTCCTGCTCCAC
CGGCAGTTGCGTCTATTTTGCGTTCGAAAGCGATTGAATTCTTGGAGAAATGGAATTCTTCGTTTGGAATTCATTACAGACAGATCAGGTTAGGTTTTGA
TTACCTTAAAACCACGCTCCGGCTTCAGTTCCCGAATGTTCAGGCTACTGCAGCTCGAGTTCAGCAGGAGAGGAGGGAAAGGGAGATGAAGACGAAAGAG
ATTCTAGTTAAGAAGTTTGAGGTTTTGAAGGAGAATTTAGTGCCGTTGAAGGAGGAAATTCGGGAAACGGTTGATGAGATTGGGGAGTGTTTAGAGATTG
TGAAGAATAAAGAGGCCAATGTTGTGCTTGGTGCTCTAGATGATGATGAGGATTTTGAAGAGTTTCGTCCTTTGGAGTTGCGTCAGCTGCGGCTTGATTC
GTTGAAAGAGGGGGAGAAGGTTTGTGAGAACAGTGAGAATAAAGTGGTTTTTGATGCATTGAGGGAGCTGTACAAGCTTTTAGTGACCAAGCACTTGGTT
TCAGTCCAAGAAGGAATCTCTGTTCTAATCAGGGTTGAAGTGGCAGATACGAGATTAAGAGATTCTATGCTCAAGGAGTTCATTGATATCCGAAATCACC
TTCAATCTGTGAAAAAGAAATGTGTTGAATCAGGTTGTGCTCTTCCAGACATTACAAAGCATGAAAAAGAAGAGGAAGAAGATTTTTGGGAGGAGGGTAA
AGTTGAATCAACTGACCCTGGGAGTTTTAGTGAACCCAATAAGCGAAACAAAAATTCTGCTGCACCATCAACTTCTGGAGAGGTGAAAAATGACCCTTCT
GAATGCAGTACCAAGAAGTTGAAACGCGATGAGTTTCTGTGTTCTGAAGGTGGTGGAACTGATTCCAGCTCGCTTCGAAGCAAGCTGATGACCGTGGCTC
CAGTGATAGAGTGGGGCTCTTTTTTGGAAACTTGGGGTTCAAACAGGGATGTTTTAGCCAACCACAGGGGCTTGGAGCTTGAAAGTCACTGGGGTAGGGT
GGACCATGATGCAGTTATTCCAGCAAAGAAAATTGCTGAATTAAACCTTCATGCAACTCTTTACAAAGAAGACAGAGTCGAAATCCAGCCATGTCGGGCT
CCATCAGGGAAGGGTGGGCTCTGTCAGAGAAGAGATTTGAGAGTTTGCCCCTTTCATGGACCCATCATTCCCCGTGATGATGAAGGAAATCCTATCAATC
AGGGCACTTCAACAAGCGATTTAACTCTTGATTTAGGGACTGATTTAGTAGAGCAATTAGCCGAACAAGCTGTGAAGAATGTTCGGGACAGAGATGAGGA
AGCAAGGAAGAGAAAAATGGACAAACAGTCACAGAAACGTGCTAAGCTTGCAAAGATACGGGAACACAATGAAGCTGTTCTGAGGGATGCTGCAGTGGCT
TCAACTTCAAGGTCTTCAGTTTATGGGGACAATGTTGAGGCATCCAGCAGGGACAGGTTGTTGGCTAGAAACAAAAAAGATACCCTCGCATCCATGTTGC
GCAAGAAAGTAACCACAAAAGATAGGCTGTCTCAGAGACTTTTGAATACAAGGGCAAGTGATGCAATGACAAGGCAGCTAACGCTGGGTGAAGATGCCAA
TTATAGAGAAGCCTTTCCAAATCAATGGTAG
AA sequence
>Potri.014G099300.1 pacid=42764027 polypeptide=Potri.014G099300.1.p locus=Potri.014G099300 ID=Potri.014G099300.1.v4.1 annot-version=v4.1
MYEIREITGASFQNYVCLINYFAAGLMEMEEGGGKARALIEKATNSTAALVDPRLLKAIKTVVRYSDSELRLAAQTLLDLMKRDHSQVRYLTLLIIDELF
MRSKLFRTLVVENLDQLLSLSVGFRRNHPLPAPPAVASILRSKAIEFLEKWNSSFGIHYRQIRLGFDYLKTTLRLQFPNVQATAARVQQERREREMKTKE
ILVKKFEVLKENLVPLKEEIRETVDEIGECLEIVKNKEANVVLGALDDDEDFEEFRPLELRQLRLDSLKEGEKVCENSENKVVFDALRELYKLLVTKHLV
SVQEGISVLIRVEVADTRLRDSMLKEFIDIRNHLQSVKKKCVESGCALPDITKHEKEEEEDFWEEGKVESTDPGSFSEPNKRNKNSAAPSTSGEVKNDPS
ECSTKKLKRDEFLCSEGGGTDSSSLRSKLMTVAPVIEWGSFLETWGSNRDVLANHRGLELESHWGRVDHDAVIPAKKIAELNLHATLYKEDRVEIQPCRA
PSGKGGLCQRRDLRVCPFHGPIIPRDDEGNPINQGTSTSDLTLDLGTDLVEQLAEQAVKNVRDRDEEARKRKMDKQSQKRAKLAKIREHNEAVLRDAAVA
STSRSSVYGDNVEASSRDRLLARNKKDTLASMLRKKVTTKDRLSQRLLNTRASDAMTRQLTLGEDANYREAFPNQW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G61800 unknown protein Potri.014G099300
[exp]
0 1
AT4G12570 UPL5 ubiquitin protein ligase 5 (.1... Potri.016G059800
[exp]
2.23 0.8802
AT4G12570 UPL5 ubiquitin protein ligase 5 (.1... Potri.006G011701
[exp]
2.44 0.8713
AT2G15560 Putative endonuclease or glyco... Potri.004G140400
[exp]
3.46 0.8680
AT5G02770 MOS11 modifier of snc1, 11, unknown ... Potri.006G134000
[exp]
3.74 0.8337
AT4G08940 Ubiquitin carboxyl-terminal hy... Potri.002G097900
[exp]
4.47 0.8745
Potri.017G120050
[exp]
7.28 0.8027
AT3G46210 Ribosomal protein S5 domain 2-... Potri.006G239100
[exp]
7.34 0.8505
AT3G59670 unknown protein Potri.005G144800
[exp]
8.94 0.8325
AT2G24530 unknown protein Potri.003G187400
[exp]
9.21 0.8321
AT3G03700 Plasma-membrane choline transp... Potri.013G066100
[exp]
9.27 0.7895

Potri.014G099300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.