Plant FIBer expression Database

Potri.014G099500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G01290 283 / 3e-96 CNX3 cofactor of nitrate reductase and xanthine dehydrogenase 3 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036661
[exp]
290 / 7e-99 AT1G01290 265 / 1e-88 cofactor of nitrate reductase and xanthine dehydrogenase 3 (.1.2)
Lus10033117
[exp]
277 / 1e-94 AT1G01290 249 / 2e-83 cofactor of nitrate reductase and xanthine dehydrogenase 3 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01967 MoaC MoaC family
Representative CDS sequence
>Potri.014G099500.1 pacid=42764756 polypeptide=Potri.014G099500.1.p locus=Potri.014G099500 ID=Potri.014G099500.1.v4.1 annot-version=v4.1
ATGTTTCTTCGGCGAGCTGCAGTGGCATTGCCCCACTCGAGAAGGTTCTTTAGTACTGACAAAACTTATGATATTTCTAGTGTCATTGAAGAAATGAATA
AGGAAATGGAATCAGTCTTTGGTGAATGTCCTCCAAGTGAATTTGCTGGTTCTAGCAATCAAGCGGTTGGAGAATCCCGTTTAAAACCTCATGGACTCGC
CAGTTCTAATAGTGAAAATTTTAGCAGGTCTCAAGAATCCCAATTTGCACATCAAAAAATGAATCATAACCCTGTTGGGCTAACCCACATTGGAAGTGCA
GGAGAGGCCCAAATGGTGGATGTGTCTCCAAAAGAAAACACTCAGAGAATTGCTATTGCTAGTTGCAAAGTAATTCTTGGCAAGAAGGTGTTTGATATGG
TCTTAGCCAACCAAATGGCCAAAGGCGATGTCCTTACCGTGGCCAAAATTGCTGGCATAAATGGAGCAAAGCATACTAGCAGCTTTATCCCATTATGCCA
CAATATCATGCTAACCCATGTTCGTGTTGATCTAGTGTTGAATCCGGATGATCACAGTGTCAAAATTGAAGGGGAAGCTGCTTCATCTGGGAAAACTGGG
GTTGAGATGGAGGCAATGATGGCCGTGACGGTTGCTGGCCTAACTGTTTATGATATGTGCAAGGCCGCTTCTAAGGAAATTCAGATGACGGATGTGCGGC
TTGAGCGTAAAACTGGTGGTAAGAGTGGGGACTGGTCCAGGGAGTAG
AA sequence
>Potri.014G099500.1 pacid=42764756 polypeptide=Potri.014G099500.1.p locus=Potri.014G099500 ID=Potri.014G099500.1.v4.1 annot-version=v4.1
MFLRRAAVALPHSRRFFSTDKTYDISSVIEEMNKEMESVFGECPPSEFAGSSNQAVGESRLKPHGLASSNSENFSRSQESQFAHQKMNHNPVGLTHIGSA
GEAQMVDVSPKENTQRIAIASCKVILGKKVFDMVLANQMAKGDVLTVAKIAGINGAKHTSSFIPLCHNIMLTHVRVDLVLNPDDHSVKIEGEAASSGKTG
VEMEAMMAVTVAGLTVYDMCKAASKEIQMTDVRLERKTGGKSGDWSRE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G01290 CNX3 cofactor of nitrate reductase ... Potri.014G099500
[exp]
0 1
AT4G21220 AtLpxD2 lipid X D2, Trimeric LpxA-like... Potri.004G039400
[exp]
2.44 0.7310
AT3G04750 Tetratricopeptide repeat (TPR)... Potri.017G153700
[exp]
6.24 0.7604
AT4G26810 SWIB/MDM2 domain superfamily p... Potri.015G137600
[exp]
13.03 0.7422
AT5G14590 Isocitrate/isopropylmalate deh... Potri.001G347800
[exp]
15.16 0.7674
AT5G39960 GTP binding;GTP binding (.1) Potri.004G230600
[exp]
16.06 0.7681
AT4G24830 arginosuccinate synthase famil... Potri.010G239000
[exp]
27.49 0.7116
AT3G58830 haloacid dehalogenase (HAD) su... Potri.005G201100
[exp]
28.61 0.7195
AT5G61510 GroES-like zinc-binding alcoho... Potri.001G140600
[exp]
32.49 0.6946
AT1G03330 Small nuclear ribonucleoprotei... Potri.004G219000
[exp]
35.51 0.7100
AT5G48330 RUG2 RCC1/UVR8/GEF-like 2, Regulato... Potri.014G198300
[exp]
40.24 0.7011

Potri.014G099500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.