Plant FIBer expression Database

Potri.014G099800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G00310 54 / 1e-08 MEE46, EDA8 MATERNAL EFFECT EMBRYO ARREST 46, EMBRYO SAC DEVELOPMENT ARREST 8, Putative membrane lipoprotein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G087500
[exp]
109 / 1e-28 AT4G00310 59 / 9e-10 MATERNAL EFFECT EMBRYO ARREST 46, EMBRYO SAC DEVELOPMENT ARREST 8, Putative membrane lipoprotein (.1.2)
Potri.002G161700
[exp]
108 / 5e-28 AT4G00310 55 / 2e-08 MATERNAL EFFECT EMBRYO ARREST 46, EMBRYO SAC DEVELOPMENT ARREST 8, Putative membrane lipoprotein (.1.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G099800.2 pacid=42763313 polypeptide=Potri.014G099800.2.p locus=Potri.014G099800 ID=Potri.014G099800.2.v4.1 annot-version=v4.1
ATGAGGATTCGTAAAAATGGGGAGTTCTCTCCACTCATGTTCCTGGAAAGTACATTGGGACCCCACCAAACAGTTCCAAAAACCATTTGCCAACTAAACC
AGTCTCCGTGGGACGTGATTCCATTCTCTAAAGAGATTTGTTCACCTTCTCTTCACCAGTTTGGAGAAGGAGATCATCGTTGTTTTAGTGGGAAGGAAAG
CTTCGGGAAATCTACTGGCGCCGTTCAAAGAAGCCCGGAGAAAAAAGGGTTCAACACTAATGAAGAAATGAAAGGAGAGAACGAGCTCAAAATCAAGAGA
GGGGTAAAGATACTGCACTTCGACAAGGCTAAAGGAAAGGAATTTCTTTGCATAAATGAGTGCAAAGATGCACAGTCAATATGTGACCATCACTTGAACT
TAGTAAAACCTCATAAGAGAAGTAGTGGTTCCGGTTGCCTGGGTGTTACAGACCCGTCTATCAAGAAACCTGCAACTAGGGCACTCAAAGGTCAGACAAG
GGCTACAAATAAAGGGCACTTTCCGAGTTCAAATGCAAACCAGTATTACTATTATTCTGGGTTCGGGCCGTTGCGAGGTAGAAGAAGGGAAAGGGGAGAA
AGTACTGATGTCAGAGAAACTTCCGTTCCAGTAACTGTTAATGGTGTTGCTCAAAATACAACGCCATCTCCTATACCAATAATTTATATTGATGATGGTT
CTGAAGAGCGTGATAGTGATCACTGA
AA sequence
>Potri.014G099800.2 pacid=42763313 polypeptide=Potri.014G099800.2.p locus=Potri.014G099800 ID=Potri.014G099800.2.v4.1 annot-version=v4.1
MRIRKNGEFSPLMFLESTLGPHQTVPKTICQLNQSPWDVIPFSKEICSPSLHQFGEGDHRCFSGKESFGKSTGAVQRSPEKKGFNTNEEMKGENELKIKR
GVKILHFDKAKGKEFLCINECKDAQSICDHHLNLVKPHKRSSGSGCLGVTDPSIKKPATRALKGQTRATNKGHFPSSNANQYYYYSGFGPLRGRRRERGE
STDVRETSVPVTVNGVAQNTTPSPIPIIYIDDGSEERDSDH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G00310 MEE46, EDA8 MATERNAL EFFECT EMBRYO ARREST ... Potri.014G099800
[exp]
0 1
AT1G08080 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANH... Potri.009G010200
[exp]
4.12 0.9499
AT1G09155 ATPP2-B15 phloem protein 2-B15 (.1) Potri.005G022000
[exp]
13.56 0.9369
Potri.002G021050
[exp]
18.97 0.8850
AT3G10660 ATCPK2, CPK2 calmodulin-domain protein kina... Potri.016G066700
[exp]
22.44 0.8920 Pt-CDPK5.5,CPK19
AT5G44400 FAD-binding Berberine family p... Potri.011G159100
[exp]
22.80 0.9246
AT5G44400 FAD-binding Berberine family p... Potri.011G160400
[exp]
24.97 0.9241
AT3G11840 PUB24 plant U-box 24 (.1) Potri.009G016100
[exp]
27.23 0.9239
Potri.006G038250
[exp]
28.98 0.9234
AT1G68620 alpha/beta-Hydrolases superfam... Potri.008G118400
[exp]
30.59 0.9232
AT5G05600 2-oxoglutarate (2OG) and Fe(II... Potri.006G101200
[exp]
34.14 0.9228

Potri.014G099800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.