Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46520 1464 / 0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT3G59020 70 / 6e-12 ARM repeat superfamily protein (.1.2) AT2G31660 59 / 1e-08 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) AT1G26170 56 / 1e-07 ARM repeat superfamily protein (.1) AT3G08960 45 / 0.0003 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G172700 [exp] 1786 / 0 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.002G232600 [exp] 71 / 4e-12 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.014G149600 [exp] 69 / 2e-11 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.T108626 [exp] 66 / 2e-10 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.008G109300 [exp] 65 / 2e-10 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.016G119900 [exp] 50 / 6e-06 AT3G08960 1547 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030241 [exp] 1466 / 0 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10005968 [exp] 1090 / 0 AT2G46520 1073 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030434 [exp] 459 / 2e-152 AT2G46520 449 / 6e-149 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030423 [exp] 379 / 2e-121 AT2G46520 398 / 6e-129 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10026635 [exp] 347 / 5e-107 AT2G46520 363 / 3e-113 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10005969 [exp] 258 / 9e-80 AT2G46520 250 / 2e-77 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030433 [exp] 209 / 4e-60 AT2G46520 212 / 5e-62 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10026726 [exp] 83 / 6e-16 AT2G31660 1084 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10025509 [exp] 82 / 2e-15 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10004753 [exp] 52 / 4e-06 AT3G08960 1432 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF03378 [poplar] [flax] CAS_CSE1 CAS/CSE protein, C-terminus CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain CL0020 [poplar] [flax] TPR PF08506 [poplar] [flax] Cse1 Cse1
Representative CDS sequence Show only first row Show all	>Potri.014G100000.1 pacid=42762295 polypeptide=Potri.014G100000.1.p locus=Potri.014G100000 ID=Potri.014G100000.1.v4.1 annot-version=v4.1 ATGGAATACAATCCAGAATTCCTCTCTCAATGTTTCCTCCACACACTCTCTCCACAACCCGAGCCTCGCCGTGCCGCCGAATCCAAACTCGCCGAACTCG CCGACCACCCTAACTACGCCCTCGCCGTCCTCCGCCTCGTAGCTGAACCCTCTATCAATGAACAGATCCGCCACGCCGCCGCTGTCAACTTCAAAAACCA CCTCCGCTCCCGGTGGGCTCCATCTCCTGATTCCTCCTTCACTCCGATCCTCGACGCGGAAAAGGACCAAATCAAAACCCTGATTGTCACTCTCATGCTC TCCTCTACTCCTCGAATCCAATCTCAGCTTAGCGAATCGCTCTCTCTTATTGGAAAACACGATTTCCCTAAATCCTGGCCCACTCTGCTGCCTGAGCTCG TGTCAAATCTCCGAGCCGCTTCGCAGTCAAACGATTATGCTTCAATTAATGGTATTCTCGGTACTGCTAATTCCATTTTTAAGAAGTTTCGTTATCAGTA TAAAACTAATGATCTCTTACTTGATTTAAAGTATTGTTTGGATAATTTCTCCGCTCCATTACTAGAAATGTTCCTTAGAACAGCGGCTTTGATTGATTCC ATGGTTAGTTCAGGTGGGGGGTCACCTGTTACTCTAAAGCCGTTGTTTGAGTCACAGAGATTGTGTTGTAGAATATTTTTTTCATTGAATTTTCAAGAGT TGCCCGAGTTTTTTGAGGATCATATGAAAGAGTGGATGGCTGAATTTAAGAAATATTTAACAAATGGCTATCCTGTGCTAGAGAGTAGTGCGGAAGGATT AGGTCTTGTTGATGAGCTTAGGGCTGCAGTATGTGAGAATATTAGTCTTTATATGGAGAAAAATGAGGAGGAGTTTAAGGATTATTTGAATGATTTTGCA CAAGCTGTTTGGACTTTGTTAGGGAATGTGTCCCAGTCCTCAAGTCGTGATAGTTTAGCTGTTACCGCAATTAAGTTTTTGACTACTGTGAGTACTAGTG TTCATCATACTTTGTTTGCGGTTGACGGGGTTATACCACAGATTTGCCAAAGTATTGTGATTCCTAATGTGAGGTTGAGGGATGAGGATGAGGAACTTTT TGAGATGAATTATATTGAGTTTATTAGGAGGGATATGGAAGGGAGTGATATAGACACTAAAAGGAGGATTGCTTGTGAATTACTTAAAGGGATTGCAACA AATTATAAGCAGCAGGTGATCAGTATAGTTTCTGTTCAGATTCAGAATTTGTTGACTTCGTATGCTGCAAACCCAGCTGCACACTGGAAGGACAAGGATT GTGCGATATATTTGGTCGTATCCCTTTCAACTAAGAAGGCCGGCGGTACTTCTGTTTCAACTGATCTTGTTGATGTTCAGAGCTTTTTTGCATCGGTAAT AGTGCCTGAGTTGCAGAGTCAGGATGTAAATGCCTTTCCAATGCTCAAGGCTGGTGCTCTTAAATTCTTTACAATGTTTAGGAATCAGATACCAAAGCCT CTTGTACTTCAGTTGTTCCCGTATTTGATTCAATTCCTAGGTGCAGAGTCAAACGTTGTTCATTCTTATGCTGCAAGCTGTATAGAAAAACTCTTGTTGG TCAAGGATGAAGGGGGAAGATCAAGGTATACTTCAACAGATGTAGCTCCAAATCTGCTAGTGCTGATGAATAACCTTTTTACTGCCTTGAGGTTTCCGGA GTCAGAGGAGAATCAATACATAATGAAGAGTATCATGCGGGTTCTAGGGGTTGCAGAAATAACTCCTGAGATTGCCGGACCTTGCATTGCTGGATTGACT TCTATTCTGGCTGAAGTTTGCAAGAATCCAAAGAATCCAATTTTCAATCACTATCTCTTTGAATCAGTGGCTGTTCTTGTAAGGCGGGCATGTGAAAGAG ACATCTCTCTCATACCATCTTTTGAAACAAGCCTGTTTCCTAGACTCCAGGAGATCTTGGGAAATGATGTAACTGAGTTTTTGCCTTATGCATTCCAGCT ATTGGCTCAACTTGTTGAGTTGAATAGACCACCCATCTCAGATACCTACATGGAAATTTTTAAACTTCTCCTGTCTCCTGATTCATGGAATAGAAACTCA AATGTCCCAGCCCTTGTCCGTCTCCTTCAGGCTTTCCTTGAGAAAGCACCTGAGAAGGTCACCCAAGAGGGGAGACTAGCTCAGGTGCTTGGCATATTTA ACAGGCTCGTGTCAGCCCCGAGCACTGATGAACAAGGCTTCTATGTGCTGAACACTGTTATTGAGAATCTTGACTATGGAACCATTGCTCCCTATGTTGG TCACATCTGGAATGCCCTATTTTCTCGCTTGCAAAGTAAACGCACAGTAAAGTTTATCAAGTCTCTTTCGATTTTCATGTCACTCTTTGTGGTCAAGCAT GGCTCTGCAAACCTTGTGGACTCTATGAATTCAGTGCAAGCTGGTATATTTTTGGTGATTTTGGAGCAGTTCTTGATACCTAATCTCAAGCTGATCACTG GGCGCATTGAGGTCAAGTTAGTATCAGTTGCCTCGATCCGACTTATCTGTGAATCTCCTGCCCTTTTGGATGCTGGGGCTGTTAGACACTGGGGGAAAAT GCTGGACAGCATTGTAACTCTCCTTTCACGAACAGAGGAGGATAGAGTTGGGGATGAACCGGAAATGCCAGATATTGCTGAAAATGCAGGTTATACTGTT TCATTTGTGAATCTGTACAATGCTGGAAAGAAGGAGGAGGATCCTTTGAAGGACATAAAAGATCCTAAGGAATTCTTGGCTGCTTCATTAGCGAAGCTTT CTGCCCTTTCCCCTGCGAGGTTTCCCCAGATCATCAATGAAAATCTTGATCCAGCAAATCAAGCAGTATTGCTCCAGATTTGCAGCACTTACAACTGTCC GATTGTTTGA
AA sequence Show only first row Show all	>Potri.014G100000.1 pacid=42762295 polypeptide=Potri.014G100000.1.p locus=Potri.014G100000 ID=Potri.014G100000.1.v4.1 annot-version=v4.1 MEYNPEFLSQCFLHTLSPQPEPRRAAESKLAELADHPNYALAVLRLVAEPSINEQIRHAAAVNFKNHLRSRWAPSPDSSFTPILDAEKDQIKTLIVTLML SSTPRIQSQLSESLSLIGKHDFPKSWPTLLPELVSNLRAASQSNDYASINGILGTANSIFKKFRYQYKTNDLLLDLKYCLDNFSAPLLEMFLRTAALIDS MVSSGGGSPVTLKPLFESQRLCCRIFFSLNFQELPEFFEDHMKEWMAEFKKYLTNGYPVLESSAEGLGLVDELRAAVCENISLYMEKNEEEFKDYLNDFA QAVWTLLGNVSQSSSRDSLAVTAIKFLTTVSTSVHHTLFAVDGVIPQICQSIVIPNVRLRDEDEELFEMNYIEFIRRDMEGSDIDTKRRIACELLKGIAT NYKQQVISIVSVQIQNLLTSYAANPAAHWKDKDCAIYLVVSLSTKKAGGTSVSTDLVDVQSFFASVIVPELQSQDVNAFPMLKAGALKFFTMFRNQIPKP LVLQLFPYLIQFLGAESNVVHSYAASCIEKLLLVKDEGGRSRYTSTDVAPNLLVLMNNLFTALRFPESEENQYIMKSIMRVLGVAEITPEIAGPCIAGLT SILAEVCKNPKNPIFNHYLFESVAVLVRRACERDISLIPSFETSLFPRLQEILGNDVTEFLPYAFQLLAQLVELNRPPISDTYMEIFKLLLSPDSWNRNS NVPALVRLLQAFLEKAPEKVTQEGRLAQVLGIFNRLVSAPSTDEQGFYVLNTVIENLDYGTIAPYVGHIWNALFSRLQSKRTVKFIKSLSIFMSLFVVKH GSANLVDSMNSVQAGIFLVILEQFLIPNLKLITGRIEVKLVSVASIRLICESPALLDAGAVRHWGKMLDSIVTLLSRTEEDRVGDEPEMPDIAENAGYTV SFVNLYNAGKKEEDPLKDIKDPKEFLAASLAKLSALSPARFPQIINENLDPANQAVLLQICSTYNCPIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46520			cellular apoptosis susceptibil...		Potri.014G100000 [exp]	0	1
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.002G189700 [exp]	20.97	0.7554
AT3G07660			Kinase-related protein of unkn...		Potri.014G169900 [exp]	22.80	0.7665
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G087500 [exp]	25.37	0.7440
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Potri.003G073000 [exp]	37.73	0.7541
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Potri.008G084700 [exp]	40.29	0.7580
AT5G04670			Enhancer of polycomb-like tran...		Potri.008G024300 [exp]	41.55	0.7554
AT4G28450			nucleotide binding;protein bin...		Potri.017G014700 [exp]	50.73	0.7171
					Potri.019G025833 [exp]	53.55	0.7552
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.008G113101 [exp]	62.48	0.7418
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Potri.010G098200 [exp]	68.11	0.7513

Compare expression of checked genes

Potri.014G100000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.