Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00950 87 / 9e-20 MEE47 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) AT5G53030 72 / 8e-15 unknown protein AT4G27810 62 / 2e-11 unknown protein AT3G61840 45 / 1e-05 Protein of unknown function (DUF688) (.1) AT2G46535 42 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G172900 [exp] 295 / 3e-101 AT4G00950 113 / 5e-30 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Potri.015G011900 [exp] 104 / 5e-27 AT4G27810 97 / 3e-25 unknown protein Potri.012G016700 [exp] 84 / 2e-19 AT4G27810 87 / 1e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010114 [exp] 87 / 7e-20 AT4G10810 63 / 5e-13 unknown protein Lus10005972 [exp] 77 / 1e-16 AT4G00950 62 / 2e-11 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Lus10030238 [exp] 69 / 1e-13 AT4G00950 61 / 1e-10 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [poplar] [flax] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Potri.014G100200.1 pacid=42764322 polypeptide=Potri.014G100200.1.p locus=Potri.014G100200 ID=Potri.014G100200.1.v4.1 annot-version=v4.1 ATGGAATCGGAGGCAGAAGAAGAGCCACGCTTCACTCCACCAAGGTCACTGCTAATACCAAAACCACGTGCATATGGACCTAGACAGTCACCGGAGAGGT CAGGGACACTAACCCCACCACTCCACACTTCAGCATCTGTCCCATTTCGATGGGAAGAAGAGCCTGGCAAACCTAGGGAATATTGCACCACCCTGATCTC CAGGCCCGTAGACTTCCCACAAAAGTGCCTAGAGTTACCTCCGAGGCTGTTAATAGAAACCCTACCTTCACCCACCACAGTCTTGGAGGGTCCTTACACG GGGAGGTCATCAAGATTTCAGTCTTCTTCGTTTAGAATAACCAGATCAAGGTCATCAAGATTTCAGTCTTCTTCGTTTAGAATAACCAGATCAAGGGAAT ATAATTATGGGTCCTTTCGCAGGCGTTGTAGTCCTGAGAGGGGTCAGCTTGGCACCATAGCTCCTAGCAAGAGGAGAGTCAAAGAGAAAGGCGGGTTTTT GGGTTCTTGGAGTTGGGGAAGGAGGGATTTGAAGGGTAATAGAGAGGCTGGTGGGGGTAGTTATGTCTTTCCGTCTTCGGGTGATAGAGAAGCTGCCGAT CAAAGCAGCAATGAGGAGGAAGAGATGGTCAGTAGCAGCGACAAAGTCAAGATGACAAGAATGAGAAGGTCAGGGAGTTTTTCTGCTGTGTCCAATGCCA GGTCTCAATTCTGGGCGAGTATTTATGAGGGCTTGAAGCACGTCGTGGGATGGAGGCGTAAGAAACTGAAGAAAGACCACGGGTTTGTGAAGTGCAGGGT GGACATGTCCAATTAA
AA sequence Show only first row Show all	>Potri.014G100200.1 pacid=42764322 polypeptide=Potri.014G100200.1.p locus=Potri.014G100200 ID=Potri.014G100200.1.v4.1 annot-version=v4.1 MESEAEEEPRFTPPRSLLIPKPRAYGPRQSPERSGTLTPPLHTSASVPFRWEEEPGKPREYCTTLISRPVDFPQKCLELPPRLLIETLPSPTTVLEGPYT GRSSRFQSSSFRITRSRSSRFQSSSFRITRSREYNYGSFRRRCSPERGQLGTIAPSKRRVKEKGGFLGSWSWGRRDLKGNREAGGGSYVFPSSGDREAAD QSSNEEEEMVSSSDKVKMTRMRRSGSFSAVSNARSQFWASIYEGLKHVVGWRRKKLKKDHGFVKCRVDMSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00950		MEE47	maternal effect embryo arrest ...		Potri.014G100200 [exp]	0	1
AT2G31130			unknown protein		Potri.004G055300 [exp]	1.41	0.8894
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.008G136100 [exp]	3.46	0.8365	RDR902,Pt-RDRP.1
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	4.00	0.8456
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Potri.010G093000 [exp]	5.65	0.8643	MYB124.2,MYB196
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G028000 [exp]	8.12	0.8719
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.001G101500 [exp]	8.83	0.8696
AT4G33540			metallo-beta-lactamase family ...		Potri.008G085751 [exp]	11.22	0.8443
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	13.67	0.8366	ARR12.2
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.008G146600 [exp]	13.74	0.8203	CYCD1.2
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188350 [exp]	14.38	0.8229

Compare expression of checked genes

Potri.014G100200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.