Plant FIBer expression Database

Potri.014G100300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46550 214 / 1e-64 unknown protein
AT1G01240 108 / 5e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G173200
[exp]
601 / 0 AT2G46550 180 / 2e-52 unknown protein
Potri.005G071400
[exp]
60 / 4e-10 AT2G46550 80 / 5e-18 unknown protein
Potri.007G097400
[exp]
57 / 4e-09 AT2G46550 66 / 5e-13 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005973
[exp]
331 / 2e-109 AT2G46550 269 / 2e-86 unknown protein
Lus10030237
[exp]
327 / 4e-108 AT2G46550 273 / 3e-88 unknown protein
Lus10023163
[exp]
44 / 5e-05 AT2G46550 60 / 5e-11 unknown protein
Lus10012748
[exp]
44 / 6e-05 AT2G46550 57 / 6e-10 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G100300.5 pacid=42763229 polypeptide=Potri.014G100300.5.p locus=Potri.014G100300 ID=Potri.014G100300.5.v4.1 annot-version=v4.1
ATGGCAGCAGCAGAAGCCAGGGCTGTATGGCAAAGAACGGCTAATCGCTGTTTTGTTCAAGAAGATGCGAAAAGAGCTCCCAAGCTAGCTTGCTGCCAGT
CATCATCTTCATCATCTAAGCAATTGGATGGAGGACCAACAAGTGCAGCAGATATGCCAGATCAATCTTCTGGAGGTTTCATGCCTCTCAGAAGGTACCC
CTCATATTCCAGTCTACCCCCTGATACAAGGTGGTGGCTTCAACTGCAACCTAGTTATGGTTACCAAAAATGTTTTACACTTGAGCAGTTGAATGCCTTA
GAAGCTGAGTTGGAAAGCTTGAGAGCTGACATTGTAGACTCACCTTCTAAAAGCAAGTTTTGCCAACAAGATGACACAGACAGCATTTTTGTGGATGGCA
GCAAGAATAGCGAGTCTTCTCTTGATTCATGTTGTATGATCCCTGCTGATTATGTGATGAAAGATCATGATGTTAAGAAGCAAGAGCTAAAAGTTTTATA
TGACAAGGATTTTCAAGAATTTAAGAACTCCAAGTTGATGGAGATGGAACCTACCGGATGGCCCAAATCACAAAAGGACAGTGCGTATGGTTTTGATCCA
GAATCTGCTTGGATTGGGGGTGAAAAGAACATGCCATGGTGGCGAGTGACGGATAAAGATGACTTGGCCTCCTTGGTTGCACAGAAGTCACTTGATTACA
TTACGAATTGTGACCTCCCCCCACCTCAGAAGATGAACATCGGGAAATACCCATGTGCTCGCCCCGGATCTTTTCAGCATGATAATACACCGGCATCATC
TTTGGATTGGAAGGAACAAAGCGGTTGCATCTCCTCTGCAACTGATCCTGTACAGGGCTGTCCCAAATTTGAAGGCATGCCTGGAAAACAAAGGGCTTCA
ACTGACAGGTTATCACAAAGTGATTCTGACAAGGCATGCAGTTTTACGAAAACCAATATGGAAACTGCAGAAATTGGACTAGTTTCTCAGGGTGATCCTT
GCAAGGCTCAACTACTGGAAGCACTCCGTCACTCTCAGACACGTGCAAGGGAAGCTGAGAAGGTAGCAAAGCAAGCCTGTGCTGAGAAGGAGCATACTAT
CAAACTCTTCTTCAAACAAGCCTCTCAACTTTTTGCATATAAGCAGTGGTTCCAACTGTTGCAGCTCGAAACCCTTTACTACCAGATGAAGAATAGCGAT
CAGCCCATGTCTAATATCTTCCCTGTAGTTCTTCCATGGATTCCTCGGAAAGGTAGGAAACTGCGCAAGAGTTGGCAAAAGTCATCCAAGGGTAAACGAG
GAAAGCGATGTCGTCCAAAGCATGACATTGGCACGTATGCTGTTGCTTTTGCATTAGGGTTGAGTCTTGTTGGTGCTGGATTGCTGCTGGGATGGACTGT
GGGTTGGATGCTGCCTTTCTAG
AA sequence
>Potri.014G100300.5 pacid=42763229 polypeptide=Potri.014G100300.5.p locus=Potri.014G100300 ID=Potri.014G100300.5.v4.1 annot-version=v4.1
MAAAEARAVWQRTANRCFVQEDAKRAPKLACCQSSSSSSKQLDGGPTSAADMPDQSSGGFMPLRRYPSYSSLPPDTRWWLQLQPSYGYQKCFTLEQLNAL
EAELESLRADIVDSPSKSKFCQQDDTDSIFVDGSKNSESSLDSCCMIPADYVMKDHDVKKQELKVLYDKDFQEFKNSKLMEMEPTGWPKSQKDSAYGFDP
ESAWIGGEKNMPWWRVTDKDDLASLVAQKSLDYITNCDLPPPQKMNIGKYPCARPGSFQHDNTPASSLDWKEQSGCISSATDPVQGCPKFEGMPGKQRAS
TDRLSQSDSDKACSFTKTNMETAEIGLVSQGDPCKAQLLEALRHSQTRAREAEKVAKQACAEKEHTIKLFFKQASQLFAYKQWFQLLQLETLYYQMKNSD
QPMSNIFPVVLPWIPRKGRKLRKSWQKSSKGKRGKRCRPKHDIGTYAVAFALGLSLVGAGLLLGWTVGWMLPF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46550 unknown protein Potri.014G100300
[exp]
0 1
AT5G07620 Protein kinase superfamily pro... Potri.004G232800
[exp]
2.00 0.8357
AT3G49800 BSD domain-containing protein ... Potri.014G008400
[exp]
8.36 0.8227
Potri.003G038525
[exp]
15.09 0.8243
AT1G64080 MAKR2 MEMBRANE-ASSOCIATED KINASE REG... Potri.003G133500
[exp]
20.14 0.7702
AT5G12250 TUB6 beta-6 tubulin (.1) Potri.001G104600
[exp]
22.71 0.8340
AT3G54140 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE T... Potri.006G096800
[exp]
24.57 0.8291
AT2G26850 F-box family protein (.1) Potri.001G273900
[exp]
28.91 0.7744
AT4G15920 SWEET17, AtSWEE... Nodulin MtN3 family protein (.... Potri.013G013800
[exp]
29.79 0.7736
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Potri.003G218900
[exp]
33.74 0.7830
AT3G11590 unknown protein Potri.004G199500
[exp]
34.58 0.7525

Potri.014G100300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.