Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01230 285 / 2e-100 ORMDL family protein (.1) AT5G42000 274 / 6e-96 ORMDL family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G174400 [exp] 305 / 2e-108 AT1G01230 254 / 3e-88 ORMDL family protein (.1) Potri.003G144600 [exp] 274 / 5e-96 AT5G42000 281 / 8e-99 ORMDL family protein (.1.2) Potri.001G086300 [exp] 263 / 9e-92 AT5G42000 273 / 1e-95 ORMDL family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005980 [exp] 293 / 2e-103 AT1G01230 295 / 1e-104 ORMDL family protein (.1) Lus10030232 [exp] 279 / 2e-90 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10023031 [exp] 259 / 4e-90 AT5G42000 270 / 1e-94 ORMDL family protein (.1.2) Lus10033219 [exp] 258 / 1e-89 AT5G42000 271 / 5e-95 ORMDL family protein (.1.2) Lus10003209 [exp] 189 / 8e-63 AT5G42000 194 / 2e-65 ORMDL family protein (.1.2) Lus10017314 [exp] 182 / 5e-60 AT5G42000 197 / 3e-66 ORMDL family protein (.1.2) Lus10031614 [exp] 75 / 3e-18 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04061 [poplar] [flax] ORMDL ORMDL family
Representative CDS sequence Show only first row Show all	>Potri.014G101000.1 pacid=42764335 polypeptide=Potri.014G101000.1.p locus=Potri.014G101000 ID=Potri.014G101000.1.v4.1 annot-version=v4.1 ATGGCGAATCTGTACGTGACGGCGGTGCCACCGGCGGATCTGAACAGGAACACGGAGTGGTTCATGTATCCAGGGGTTTGGACTACTTACATATTAATAT TGTTCTTTTCTTGGCTTATTGTTCTCTCTATCTTTGCTTGCTCTCCTGGCATGGCTTGGACCATCGTCAATCTCTCTCACTTTGCCATCACTTATCACTT TTTCCACTGGAAGAAAGGAACCCCATTTGCAGAAGACCAGGGGATCTATAATCGGCTGACCTGGTGGGAGCAGATGGATAGTGGAAAGCAGCTGACACGG AACAGAAAGTTTCTAACTGTTGTACCTCTGGTGCTGTACTTGATAGCCTCACACACAACTGACTATCGACATCCAATGCTCTTTTTCAACACTGTTGCTG TGATAGTGCTTGTTGTTGCCAAGTTCCCAAATATGCACAAGGTTCGGATCTTTGGAATAAATGCAGACAAGTGA
AA sequence Show only first row Show all	>Potri.014G101000.1 pacid=42764335 polypeptide=Potri.014G101000.1.p locus=Potri.014G101000 ID=Potri.014G101000.1.v4.1 annot-version=v4.1 MANLYVTAVPPADLNRNTEWFMYPGVWTTYILILFFSWLIVLSIFACSPGMAWTIVNLSHFAITYHFFHWKKGTPFAEDQGIYNRLTWWEQMDSGKQLTR NRKFLTVVPLVLYLIASHTTDYRHPMLFFNTVAVIVLVVAKFPNMHKVRIFGINADK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01230			ORMDL family protein (.1)		Potri.014G101000 [exp]	0	1
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.005G109900 [exp]	2.00	0.7968
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Potri.017G139700 [exp]	3.87	0.7549
AT5G02570			Histone superfamily protein (....		Potri.009G028001 [exp]	4.89	0.7236
AT1G51200			A20/AN1-like zinc finger famil...		Potri.016G051700 [exp]	4.89	0.7577
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Potri.014G153800 [exp]	6.63	0.7411
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Potri.008G019400 [exp]	7.21	0.6976	VAMP727.1
AT1G68140			Protein of unknown function (D...		Potri.003G021800 [exp]	7.74	0.6981
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	8.36	0.7254
AT1G02305			Cysteine proteinases superfami...		Potri.002G184300 [exp]	8.48	0.7108
AT5G18120		ATAPRL7	APR-like 7 (.1)		Potri.019G035700 [exp]	9.79	0.6768

Compare expression of checked genes

Potri.014G101000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.