Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01225 353 / 9e-124 NC domain-containing protein-related (.1) AT4G00905 340 / 1e-118 NC domain-containing protein-related (.1) AT5G06370 236 / 7e-78 NC domain-containing protein-related (.1) AT3G02700 227 / 3e-74 NC domain-containing protein-related (.1) AT5G16360 186 / 4e-58 NC domain-containing protein-related (.1) AT5G16330 176 / 1e-54 NC domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G174700 [exp] 445 / 2e-160 AT1G01225 333 / 7e-116 NC domain-containing protein-related (.1) Potri.006G203300 [exp] 248 / 2e-82 AT5G06370 396 / 4e-141 NC domain-containing protein-related (.1) Potri.004G078700 [exp] 227 / 2e-74 AT3G02700 343 / 3e-120 NC domain-containing protein-related (.1) Potri.017G142300 [exp] 225 / 1e-73 AT3G02700 328 / 2e-114 NC domain-containing protein-related (.1) Potri.013G043100 [exp] 79 / 9e-18 AT5G06370 87 / 1e-20 NC domain-containing protein-related (.1) Potri.005G056300 [exp] 49 / 2e-07 AT5G16330 49 / 1e-07 NC domain-containing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030231 [exp] 374 / 4e-132 AT1G01225 360 / 1e-126 NC domain-containing protein-related (.1) Lus10005981 [exp] 368 / 9e-130 AT1G01225 360 / 8e-127 NC domain-containing protein-related (.1) Lus10029402 [exp] 249 / 1e-82 AT5G06370 410 / 3e-146 NC domain-containing protein-related (.1) Lus10010962 [exp] 169 / 1e-51 AT3G02700 268 / 8e-91 NC domain-containing protein-related (.1) Lus10004198 [exp] 118 / 1e-32 AT5G06370 210 / 1e-68 NC domain-containing protein-related (.1) Lus10031362 [exp] 0 / 1 AT3G02700 69 / 6e-18 NC domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF04970 [poplar] [flax] LRAT Lecithin retinol acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.014G101300.1 pacid=42762333 polypeptide=Potri.014G101300.1.p locus=Potri.014G101300 ID=Potri.014G101300.1.v4.1 annot-version=v4.1 ATGGGTTTCCTTAGCCATAGAGTGGAGAGAAGTGAAATCAAACCAGGAGATCATATCTATACTTATAGAGCTGTTTTCACTTACTCACATCATGGTGTCT TTGTTGGGGGAAGCAAGGTGGTCCATTTTACACCCAGGCAGAATGCAAATTCAAGCTCTGATACATCTTCTGACTTCTATGATTCAATGTCAAGCATTCC ATCATCTTGTGAAACCTTTCCTGACTGTGGATTCAGACAACCTGATAGTGGCGTAGTCCTCTCATGCCTGGACTGCTTCCTCAAAAAAGGATCCCTTTAC AGCTTTGAGTATGGGGTGCCCCCTACTGTTTTTATTGCAAAAGTACGTGGAGGCACATGCACCACTGCAGCATCTGATCCACCAGAAACTGTTATCCACA GAGCAATGTATCTTCTTCAAAATGGATTTGGCAATTATGATGTATTTCATAACAATTGCGAGGATTTTGCAATGTACTGCAAGACAGGTCTTTTGATAAT GGACAGACTGGGGGTTGGAAGAAGTGGTCAAGCTTCTTCGGTTATTGGTGCTCCATTGGCCGCAATTCTTTCATCCCCTTTAAAGTTGTTAATGCCTAGT CCTGTTGGTGTGGCTACGGTAACAGCTGGAATGTACTGCATGAGCAGATATGCTACTGATATAGGTGTTCGGAGTGATGTAATCAAGGTGGCCGTGGAAG ATTTGGCTATGAACCTGGGCTGGGCTGGCCCTCTGGAGGAAGTACCTGAAGACAATGAGGCCTCTGGTGCACTGATTGCCAGGTGA
AA sequence Show only first row Show all	>Potri.014G101300.1 pacid=42762333 polypeptide=Potri.014G101300.1.p locus=Potri.014G101300 ID=Potri.014G101300.1.v4.1 annot-version=v4.1 MGFLSHRVERSEIKPGDHIYTYRAVFTYSHHGVFVGGSKVVHFTPRQNANSSSDTSSDFYDSMSSIPSSCETFPDCGFRQPDSGVVLSCLDCFLKKGSLY SFEYGVPPTVFIAKVRGGTCTTAASDPPETVIHRAMYLLQNGFGNYDVFHNNCEDFAMYCKTGLLIMDRLGVGRSGQASSVIGAPLAAILSSPLKLLMPS PVGVATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAMNLGWAGPLEEVPEDNEASGALIAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01225			NC domain-containing protein-r...		Potri.014G101300 [exp]	0	1
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	1.41	0.9381
AT2G25270			unknown protein		Potri.006G258700 [exp]	1.73	0.9338
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	2.00	0.9268
AT4G23740			Leucine-rich repeat protein ki...		Potri.003G136100 [exp]	2.44	0.9351
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G073925 [exp]	4.58	0.9047
AT2G43200			S-adenosyl-L-methionine-depend...		Potri.007G123500 [exp]	5.65	0.8948
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.003G161700 [exp]	6.00	0.9052	CYP51G5,CYP51.1
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Potri.011G154700 [exp]	6.32	0.9058
AT2G01210			Leucine-rich repeat protein ki...		Potri.010G120100 [exp]	6.48	0.8851
AT3G56370			Leucine-rich repeat protein ki...		Potri.013G091000 [exp]	8.77	0.8981

Compare expression of checked genes

Potri.014G101300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.