Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01220 1568 / 0 AtFKGP Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, L-fucokinase/GDP-L-fucose pyrophosphorylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030230 [exp] 1654 / 0 AT1G01220 1599 / 0.0 Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, L-fucokinase/GDP-L-fucose pyrophosphorylase (.1) Lus10005982 [exp] 1453 / 0 AT1G01220 1389 / 0.0 Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, L-fucokinase/GDP-L-fucose pyrophosphorylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00288 [poplar] [flax] GHMP_kinases_N GHMP kinases N terminal domain CL0536 [poplar] [flax] HEXAPEP PF07959 [poplar] [flax] Fucokinase L-fucokinase
Representative CDS sequence Show only first row Show all	>Potri.014G101400.3 pacid=42763876 polypeptide=Potri.014G101400.3.p locus=Potri.014G101400 ID=Potri.014G101400.3.v4.1 annot-version=v4.1 ATGGAATCAAGAAGAGAAAGAGCATTCTCTCGAACCAAACACAAGAAAGTTGACATAACCTCAATCCTACGAAAATCATGGTACCATTTAAGGTTGTCGG TCAGGCATCCTTCCAGAGTCCCTACATGGGATGCTATTGTCCTAACTGCTGCTAGCCCTGAACAAGCCCAGTTATATGAATGGCAGCTTAACCGAGCCAA GCGTATGGGCCGGATCGCTAGCTCTACTATCACGTTAGCTGTGCCTGATCCCGATGCTAAGCGGATCGGCTCCGGTGCTGCCACTCTCAATGCCATTTTT GCCCTTGGCAGACATTATCAGTCTCTCGGTCTCCATCTTGGCGAACAGGTGGAAACAACAGAGAATGGCAGTTCTGGATCAAGTGTGCCGCATGAAGAGT CTAATAGTGCAGATTCTACTGAGCCAATGGTTAGGTTTATGGAAAAAAAACACATACTATTGCTTCATGCTGGAGGTGACTCTAAAAGGGTACCATGGGC AAACCCTATGGGGAAAATTTTCCTACCACTTCCATTTTTGGCAGCAGATGACCCTGATGGGCCAGTTCCGCTGCTTTTTGACCATATTCTTGCAATTGCT TCTTGTGCAAGACAAGCATTTAAAAATGAAGGAGGAATATTGACCATGACTGGGGATGTCCTTCCATGTTTTGATGCATCCACCTTGGTTATTCCAGAGG ATGCATCCTGCATTATTACTGTGCCCATTACTCTTGATGTTGCATCTAATCATGGTGTTATTGTGGCATCTGATACTGGTATTCTCACTGAAAGCTATAC AGTCAGTCTAGTTGACAATCTCCTACAGAAACCCAGTCTAGAGGAACTTGTTGAGAATGAAGCTATATTAGATGATGGTAGAACATTGCTGGACACTGGA ATAATAGCAGCCAGAGGCAAAGCATGGGCAGAACTTGCCATGCTTGCATCATCCTGTGAACCAATGATTGAAGAGCTTTTGAAGAGCAGAAAAGAGATGA GTTTGTATGAAGATCTGGTAGCAGCTTGGGTACCTGCCAAACATGACTGGCTGAGAGCACGCCCTCTAGGCGAGGAAATGGTCAGGAGTTTGGGCAGGCA AAATATGTTTAGTTACTGTGCATATGATTTGTTGTTCCTACACCTTGGAACTTCAAGTGAAGTATTGGATCACTTAAGTGGAGCTAGCTCAGAACTTGTT GGCCGAAGACATTTGTGTTCCATCCCAGCCACAACTTCATCTGATATTGCAGCATCTGCTGTAGTCCTTTCTAGCAAAATTGAACCTGGTGTTTCTGTTG GTGAAGATTCTCTTATATATGATTCATTCATTTCCAGTGGAATACAAATTGGTTCCCTATCGGTGGTTGTTGGCGTTAATGTCCCAAGAGATATTGGTGG GATGGCAGATGATTCATTTAGGTTCATGCTTCCAGATCGTCATTGTCTTTGGGAGGTTCCTTTAGTGGGATGCACGGAAAGAGTAATAGTGTATTGTGGC CTTCATGATAATCCAAAAAGTTCCCTTTCCAGGGATGGGACCTTTTGTGGGAAACCCTGGAAGAAAGTCTTGCTTGATTTAGGTATTCAAGAGAGTGATC TGTGGAGTTCAGTAGGTGTTCAAGAGAATTGTTTATGGAATGCAAAATTATTCCCCATTCTTTCTTACTTAGAGATGCTTCATCTGGCATCATGGCTGAT GGGGTTGAGTGATCAAAATTCAAGAACCTTGCTTCCCTTGTGGAAAAGTTCACGCCGTGTCAGTTTAGAGGAATTGCATAGATCAATTGACTTTCTGAAA ATGTGTACGGGCTCAAGTAATCATCAAGCAGATCTTGCTGCTGGAATCGCTAAAGCTTGCATTAACTATGGCATGCTTGGACGGAATTTATCTCAACTAT GCCAAGAAATTTTACAGAAGGAGGCTTCTGGAGTCAAAATATGTGAGGACTTCCTAGAACTTTGTCCCAAACTGGAGGAGCAGAATTCTAAAATTCTCCC CAGAAGCAGGGCATACCAGGTGCAAGTTGATCTTCTTCGAGCATGTGGAGATGAAACAACTGCATGTCATTTAGAACATAAAGTTTGGGCTGCAGTTGTT GATGAAACTGCTTCAGCAGTGAGATATGGATTCAGAGAACGTGTCTTGGAGTCCCCTAGCAGCACACCTACTTCAGCAGACCAGAACAATCATTTTGATG GCTATGTGGATCAACCTTTCTGCCCTAGAATGGTAAAGGTTGAGTTACCGGTTCGGGTAGATTTTGCTGGGGGATGGAGTGATACCCCTCCATGGAGCTT AGAGCGTGCTGGTTGTGTTCTGAATTTGGCAATAAGTTTGGAAGGTTGCCTTCCAATTGGCACCATTATAGAGACAACAGAAAAGACTGGAGTTTTGATT AATGATGATGCTGGAAACCAGTTATATGTTGAGAATCTTGTCTCTTTCGCTCCTCCATTTGATGGCAACGATCCATTCCGGCTCGTCAAATCTGCGTTGC TGGTGACTGGTTTGGTTCATGAAAACATTCTTGTATCTATGGGCTTGCAAATCAAGACATGGGCTAATGTACCCCGTGGTAGCGGACTGGGAACTTCTAG CATACTAGCAGCTGCTGTTGTGAAAGGACTTCTTCAGATAACAGATGGAGATGAAAGTAATGAAAATGTTGCTAGACTTGTTTTGGTATTGGAGCAACTC ATGGGGACAGGAGGTGGCTGGCAGGATCAAGTTGGAGGTTTGTACCCTGGGATTAAATTCACTACAAGTTTCCCTGGAGTACCGTTGCGGCTCCAGGTCA TTCCCCTATTGGCTTCTCCTCAGTTGATTTTGGAGTTGCAGCAGAGATTGCTTGTAGTATTTACTGGTCAAGTTCGTCTTGCACATCAAGTCCTACAGAA GGTGGTAACTAGATATCTTCAGCGGGATAACCTTCTTGTATCCAGCATTAAGCGCCTCACTGAGCTGGCCAAAATTGGTAGGGAAGCTTTAATGAACTGT GAGGTAGATGAACTAGGTAAGATAATGCTCGAGGCCTGGAGGTTGCATCAAGAACTTGACCCTTACTGTAGCAACGAATTTGTGGATAAACTCTTTGCAT TTGCTGACCCCTACTGCTGTGGATACAAACTTGTCGGTGCTGGTGGCGGGGGCTTTGCTTTGTTACTGGCCAAGAATGCCGAATCTGGAAATGAGCTGAA GAATAAACTAGAAGATTCCAGTCTTAATGTGAAATTCTACAATTGGAAGATCCATTTAGATAATTAG
AA sequence Show only first row Show all	>Potri.014G101400.3 pacid=42763876 polypeptide=Potri.014G101400.3.p locus=Potri.014G101400 ID=Potri.014G101400.3.v4.1 annot-version=v4.1 MESRRERAFSRTKHKKVDITSILRKSWYHLRLSVRHPSRVPTWDAIVLTAASPEQAQLYEWQLNRAKRMGRIASSTITLAVPDPDAKRIGSGAATLNAIF ALGRHYQSLGLHLGEQVETTENGSSGSSVPHEESNSADSTEPMVRFMEKKHILLLHAGGDSKRVPWANPMGKIFLPLPFLAADDPDGPVPLLFDHILAIA SCARQAFKNEGGILTMTGDVLPCFDASTLVIPEDASCIITVPITLDVASNHGVIVASDTGILTESYTVSLVDNLLQKPSLEELVENEAILDDGRTLLDTG IIAARGKAWAELAMLASSCEPMIEELLKSRKEMSLYEDLVAAWVPAKHDWLRARPLGEEMVRSLGRQNMFSYCAYDLLFLHLGTSSEVLDHLSGASSELV GRRHLCSIPATTSSDIAASAVVLSSKIEPGVSVGEDSLIYDSFISSGIQIGSLSVVVGVNVPRDIGGMADDSFRFMLPDRHCLWEVPLVGCTERVIVYCG LHDNPKSSLSRDGTFCGKPWKKVLLDLGIQESDLWSSVGVQENCLWNAKLFPILSYLEMLHLASWLMGLSDQNSRTLLPLWKSSRRVSLEELHRSIDFLK MCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCQEILQKEASGVKICEDFLELCPKLEEQNSKILPRSRAYQVQVDLLRACGDETTACHLEHKVWAAVV DETASAVRYGFRERVLESPSSTPTSADQNNHFDGYVDQPFCPRMVKVELPVRVDFAGGWSDTPPWSLERAGCVLNLAISLEGCLPIGTIIETTEKTGVLI NDDAGNQLYVENLVSFAPPFDGNDPFRLVKSALLVTGLVHENILVSMGLQIKTWANVPRGSGLGTSSILAAAVVKGLLQITDGDESNENVARLVLVLEQL MGTGGGWQDQVGGLYPGIKFTTSFPGVPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLVSSIKRLTELAKIGREALMNC EVDELGKIMLEAWRLHQELDPYCSNEFVDKLFAFADPYCCGYKLVGAGGGGFALLLAKNAESGNELKNKLEDSSLNVKFYNWKIHLDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Potri.014G101400 [exp]	0	1
AT3G49050			alpha/beta-Hydrolases superfam...		Potri.012G142700 [exp]	1.00	0.8142
AT5G36930			Disease resistance protein (TI...		Potri.005G206400 [exp]	3.00	0.7930
AT1G70570			anthranilate phosphoribosyltra...		Potri.010G044900 [exp]	3.16	0.8117
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.004G227200 [exp]	8.66	0.7767
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Potri.015G078801 [exp]	14.49	0.7648
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Potri.001G161400 [exp]	15.23	0.7828	AHA10.1
AT3G19850			Phototropic-responsive NPH3 fa...		Potri.008G085500 [exp]	21.49	0.7655
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	22.80	0.7613
AT5G65620			Zincin-like metalloproteases f...		Potri.007G004600 [exp]	22.91	0.7135
AT1G58030		CAT2	cationic amino acid transporte...		Potri.013G065000 [exp]	30.70	0.6990	Pt-CAT3.2

Compare expression of checked genes

Potri.014G101400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.