Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18750 565 / 0 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 548 / 0 WNK7 Protein kinase superfamily protein (.1.2) AT5G41990 513 / 8e-176 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 487 / 3e-166 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT3G48260 475 / 2e-161 WNK3 with no lysine (K) kinase 3 (.1) AT3G04910 459 / 6e-153 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G22420 450 / 4e-151 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT5G28080 434 / 4e-146 WNK9 Protein kinase superfamily protein (.1.2) AT3G51630 427 / 2e-142 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 402 / 3e-132 ZIK2, WNK4 with no lysine (K) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G085500 [exp] 588 / 0 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.003G145300 [exp] 585 / 0 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.005G057300 [exp] 536 / 0 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G037200 [exp] 478 / 4e-162 AT5G41990 429 / 8e-145 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.012G086700 [exp] 469 / 3e-158 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 468 / 5e-158 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.013G036300 [exp] 472 / 2e-157 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 466 / 4e-155 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 461 / 4e-153 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030229 [exp] 707 / 0 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10005983 [exp] 667 / 0 AT3G18750 523 / 3e-178 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10033225 [exp] 564 / 0 AT5G41990 620 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10017318 [exp] 553 / 0 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10003215 [exp] 549 / 0 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10000334 [exp] 545 / 0 AT5G41990 597 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10041947 [exp] 471 / 7e-159 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10020236 [exp] 469 / 1e-156 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 467 / 5e-156 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10017957 [exp] 465 / 2e-151 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.014G101500.1 pacid=42762882 polypeptide=Potri.014G101500.1.p locus=Potri.014G101500 ID=Potri.014G101500.1.v4.1 annot-version=v4.1 ATGATACCTGTTACTAGTGATAGTGCTGGATTAGTTTTGGCATCAAATAATGGAATGTATTCAGCGATGGAGCCTTCTGATGCTGGGGCTGATTTGGTAG AAAAAGATCCAACCGGTAGATATGTCCGGTATGATGATGTGTTGGGAAAGGGTGCATTTAAGACTGTTTACAGGGCATTTGATGAAGTGGATGGGATAGA AGTTGCTTGGAACCAAGTGAGAATTGATGATGTCTTGCGATCGCCAGAAGATTTTGAAAAATTATATTCTGAAGTTTATCTGCTAAGGTCACTAAGACAT GAAAACATCATCAAGTTCTCCAATTCTTGGGTGGATGATAAGAACAAAACAATTAACATGATTACTGAACTCTTCACATCTGGGAATCTGAGGCAATATC GAAGGAAGCACAGAAATATTGATATAAAAGCAATAAAGAATTGGGCGAGGCAAATTCTCCGAGGTTTAGTCTATCTCCATGGTCACAGTCCGCCTATAAT TCACAGGGATTTAAAATGTGACAATATATTTGTTAATGGAAATCATGGAGAAGTTAAAATTGGAGACCTTGGGTTGGCCATTGTTATGCAGAATCCTACT GCAAAGAGCGTTATCGGAACTCCTGAATTTATGGCTCCAGAACTATATGAAGAGGAATATAACGAACTTGTCGACATATATTCTTTTGGGATGTGCATAT TAGAATTGGTTACTTGTAATTATCCATACAGTGAATGCAGAAATGCAGCTCAAATTTATAAGAAGGTTACCTCTGGTATTAAACCTGCTTCCCTCAAGAC AGTGGGTAACACACAGATTAAGGAGTTTATTGAGAAATGTCTTCTTCCAGCATCTGAGAGATTGTCTGCCAAGGAGCTACTCAAACATCCATTTCTTCAG CTTGAGATTCCAATACTGGAACAGATCTGTGATCCCTTACCGGTACCTGACCAGTTTCCTATATCACTAAGTTTACCCAAGTCTGGCCCTCTATTCATGG ACATGGATATCGACGAAAAGCAACTTTCAGAAAGTACATGTACCGGAAGCAACAATGGAAGTCCAAAATCTCCAGTTTTGGAATATCAGAGAGCACATAA GAACAATGAATTTGGGTTAAAGGGGATGAAAAATGATGATAACTCTGCGTCTCTGACCTTACGAATCTCTGACTTGGGTGGTCGGGTGAGGAATATTCAT TTTATCTTCTACCTTGACAGCGATACCGCAATATCTGTGGCAAGTGAGATGGTTGAACAACTAGAGTTGGCAGATCATGATGTCGCTTTCATAGCTGAAC TTATTGATTCCTTGATTGTGAAACTTCTCCCTGGTTGGAAGCCATCGTCTTATGGTTCCTCAAATGTTGCAATAGGTCCTTGCACTGAGTCCCCAGTCTT TGAAAATGGAGAAAAATCAATTGCATACCCTTGGAATTCAATGTTGAGTAGTGTTCCTGTTGGAACACTAGCTGAGCAAGATGATCTCTCTGGGTTAACA AGGAGTCATTGCTTACAAGCTGATGATAGTAATATCAGTGACAGCCCCAATAATGAGATTTCTCAATTTGTATACAATTCCTCTCCAAGTTTAGCTAACA TGGGAGATCAAGAATCTCAGTCATCAATTGTTTCAGAGATACTTGTCCAAGGTGCTTCATCTATAAACAGTAGAACGTCTGAATATTACAATAATGATGG AAGCTTCAAAGGCACAAATGGATATGTTACTGAGTCAAAGCTTGGAGATGCATATCTCAATTGCAAGTTGGATAGACAAGATAGTTATGTAGGAGAATTC GTTTCAATGAACGAATCTACAGAGAACTCAGAGTGGTCATTCCCCAAGCAAAGTGGAGCATCAAATGTTATGAGCTTGACGAGCAGCTGTTCTTCTCAAT CATTAGCTGACAAAGACGGATATGATGATCTAAAGCTGGGACTCGATGCAATAGAGGCACAGTACCATAATTGGTTTGTAGAACTTACTAGGATGAAAGA GGAGGCGCTGGAGGCCACCAGAAAGAGATGGACAGAAAAGAAGAAGTTAGCTGCTCATTGA
AA sequence Show only first row Show all	>Potri.014G101500.1 pacid=42762882 polypeptide=Potri.014G101500.1.p locus=Potri.014G101500 ID=Potri.014G101500.1.v4.1 annot-version=v4.1 MIPVTSDSAGLVLASNNGMYSAMEPSDAGADLVEKDPTGRYVRYDDVLGKGAFKTVYRAFDEVDGIEVAWNQVRIDDVLRSPEDFEKLYSEVYLLRSLRH ENIIKFSNSWVDDKNKTINMITELFTSGNLRQYRRKHRNIDIKAIKNWARQILRGLVYLHGHSPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQNPT AKSVIGTPEFMAPELYEEEYNELVDIYSFGMCILELVTCNYPYSECRNAAQIYKKVTSGIKPASLKTVGNTQIKEFIEKCLLPASERLSAKELLKHPFLQ LEIPILEQICDPLPVPDQFPISLSLPKSGPLFMDMDIDEKQLSESTCTGSNNGSPKSPVLEYQRAHKNNEFGLKGMKNDDNSASLTLRISDLGGRVRNIH FIFYLDSDTAISVASEMVEQLELADHDVAFIAELIDSLIVKLLPGWKPSSYGSSNVAIGPCTESPVFENGEKSIAYPWNSMLSSVPVGTLAEQDDLSGLT RSHCLQADDSNISDSPNNEISQFVYNSSPSLANMGDQESQSSIVSEILVQGASSINSRTSEYYNNDGSFKGTNGYVTESKLGDAYLNCKLDRQDSYVGEF VSMNESTENSEWSFPKQSGASNVMSLTSSCSSQSLADKDGYDDLKLGLDAIEAQYHNWFVELTRMKEEALEATRKRWTEKKKLAAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Potri.014G101500 [exp]	0	1
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Potri.002G195800 [exp]	3.87	0.7900
AT5G12970			Calcium-dependent lipid-bindin...		Potri.001G015700 [exp]	7.14	0.8291
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.003G183300 [exp]	8.83	0.8210
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G013700 [exp]	17.54	0.7624
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Potri.008G084800 [exp]	26.26	0.8129	DIM.2
AT5G50150			Protein of Unknown Function (D...		Potri.015G080300 [exp]	26.53	0.7787
AT4G22010		SKS4	SKU5 similar 4 (.1)		Potri.004G010100 [exp]	27.71	0.7525
AT1G73620			Pathogenesis-related thaumatin...		Potri.015G039200 [exp]	34.35	0.7957
AT3G08030			Protein of unknown function, D...		Potri.009G058800 [exp]	34.46	0.7519
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Potri.018G132700 [exp]	36.08	0.7277

Compare expression of checked genes

Potri.014G101500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.