Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46600 181 / 4e-60 Calcium-binding EF-hand family protein (.1) AT4G27280 110 / 3e-32 Calcium-binding EF-hand family protein (.1) AT5G54490 108 / 2e-31 PBP1 pinoid-binding protein 1 (.1) AT4G14640 53 / 2e-09 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT5G37780 52 / 2e-09 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 52 / 2e-09 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G21274 52 / 5e-09 ACAM-6, CAM6 calmodulin 6 (.1) AT3G51920 51 / 5e-09 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT3G43810 50 / 1e-08 CAM7 calmodulin 7 (.1) AT2G27030 49 / 1e-08 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G174900 [exp] 213 / 2e-72 AT2G46600 174 / 4e-57 Calcium-binding EF-hand family protein (.1) Potri.013G151000 [exp] 135 / 3e-42 AT5G54490 147 / 7e-47 pinoid-binding protein 1 (.1) Potri.011G129100 [exp] 132 / 7e-41 AT4G27280 124 / 5e-38 Calcium-binding EF-hand family protein (.1) Potri.011G039500 [exp] 126 / 1e-38 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.011G039600 [exp] 126 / 1e-38 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.001G412077 [exp] 125 / 2e-38 AT4G27280 117 / 4e-35 Calcium-binding EF-hand family protein (.1) Potri.004G027200 [exp] 122 / 6e-37 AT5G54490 127 / 3e-39 pinoid-binding protein 1 (.1) Potri.019G120600 [exp] 121 / 1e-36 AT5G54490 147 / 6e-47 pinoid-binding protein 1 (.1) Potri.011G125300 [exp] 120 / 4e-36 AT5G54490 122 / 5e-37 pinoid-binding protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005985 [exp] 174 / 2e-57 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10030227 [exp] 174 / 2e-57 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10031588 [exp] 132 / 6e-41 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10033753 [exp] 132 / 6e-41 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10018511 [exp] 129 / 6e-40 AT4G27280 140 / 2e-44 Calcium-binding EF-hand family protein (.1) Lus10039724 [exp] 127 / 4e-39 AT4G27280 139 / 1e-43 Calcium-binding EF-hand family protein (.1) Lus10036734 [exp] 103 / 1e-29 AT5G54490 107 / 2e-31 pinoid-binding protein 1 (.1) Lus10041179 [exp] 50 / 4e-09 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10039391 [exp] 51 / 7e-09 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10024830 [exp] 51 / 8e-09 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.014G101700.1 pacid=42763677 polypeptide=Potri.014G101700.1.p locus=Potri.014G101700 ID=Potri.014G101700.1.v4.1 annot-version=v4.1 ATGGAGAAGGGTCAAATTGGGATGAAAACTGCAACAAGCGGCGAGTATCAGGATTTGTTACCGGTTATGGCAGAGAAGCTTGATGTAAAGACTTTTGTGT CTGAATTATGTGGGGGCTTTCGTCTTCTGGCGGACCCCGAAAAGGGGTTGATTACATCAGAAAGTCTGCGAAGGAATTCGGCACTACTAGGGATGGAAGG GATGAGCAAAGAAGATGCAGAGGCTATGGTGAGAGAAGGAGACCTTGACGGAGATGGAGCACTCAATGAAACAGAATTCTGCGTTCTGATGGTGAGACTG AGTCCTGAGATGATGCAGGATGCTGAAACCTGGCTCCAGAAAGCACTTGAACAGGAACCAAGGACATCCTCACCCTGA
AA sequence Show only first row Show all	>Potri.014G101700.1 pacid=42763677 polypeptide=Potri.014G101700.1.p locus=Potri.014G101700 ID=Potri.014G101700.1.v4.1 annot-version=v4.1 MEKGQIGMKTATSGEYQDLLPVMAEKLDVKTFVSELCGGFRLLADPEKGLITSESLRRNSALLGMEGMSKEDAEAMVREGDLDGDGALNETEFCVLMVRL SPEMMQDAETWLQKALEQEPRTSSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46600			Calcium-binding EF-hand family...		Potri.014G101700 [exp]	0	1
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.008G205200 [exp]	1.00	0.9708	Pt-IFS1.42
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Potri.007G066300 [exp]	2.44	0.9578
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.005G256100 [exp]	4.24	0.9657	11
AT4G23880			unknown protein		Potri.003G140266 [exp]	6.00	0.9524
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G018200 [exp]	6.32	0.9444
AT4G23880			unknown protein		Potri.003G140233 [exp]	7.74	0.9503
AT4G23880			unknown protein		Potri.003G140200 [exp]	9.16	0.9487
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028500 [exp]	9.94	0.9402
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G016733 [exp]	10.00	0.8349
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.004G181900 [exp]	10.95	0.9495

Compare expression of checked genes

Potri.014G101700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.