Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ECA2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00900 1697 / 0 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) AT1G07670 1343 / 0 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 1340 / 0 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT1G10130 790 / 0 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT4G37640 342 / 3e-101 ACA2 calcium ATPase 2 (.1) AT3G57330 342 / 4e-101 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G22950 337 / 2e-99 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT2G41560 335 / 9e-99 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT5G57110 320 / 5e-93 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G21180 315 / 3e-91 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233400 [exp] 1333 / 0 AT1G07670 1800 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.009G025700 [exp] 1326 / 0 AT1G07670 1743 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.014G014700 [exp] 756 / 0 AT1G10130 1659 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.002G117400 [exp] 755 / 0 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.016G043100 [exp] 350 / 4e-104 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.003G204000 [exp] 349 / 1e-103 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.007G055500 [exp] 348 / 3e-103 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.001G020600 [exp] 337 / 2e-99 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.006G046500 [exp] 334 / 2e-98 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028139 [exp] 1347 / 0 AT1G07670 1798 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10042843 [exp] 1345 / 0 AT1G07670 1799 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10023328 [exp] 1199 / 0 AT1G07670 1549 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10007734 [exp] 773 / 0 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10018668 [exp] 708 / 0 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10038484 [exp] 625 / 0 AT1G07670 816 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10031053 [exp] 347 / 7e-103 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10035439 [exp] 344 / 1e-101 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10025199 [exp] 336 / 2e-99 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1) Lus10042040 [exp] 337 / 4e-99 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.014G101900.1 pacid=42764010 polypeptide=Potri.014G101900.1.p locus=Potri.014G101900 ID=Potri.014G101900.1.v4.1 annot-version=v4.1 ATGGAGGAAAAACCATTCCCTGCATGGTCATGGTCTGTGGAGCAGTGTTTGAAAGAGTTCAATGTGAAGTTAGACAAGGGTCTGAGTTCTTATGAGGTTG AGAAGCGGCGAGAGAGGTATGGTTGGAATGAGCTTGCTAAAGAGAAGGGTAAGCCCTTGTGGTGGTTAGTATTAGAACAATTTGATGATATGCTTGTAAA GATACTTCTGGTTGCAGCTTTTATATCATTTATTCTAGCTTATTTACATGCGGGTGAGTCTGGGGAGGCTGGATTTGAAGCTTATGTGGAGCCACTTGTT ATAGTTTTGATTTTAGCCCTTAATGCTATTGTGGGGGTGTGGCAAGAGACTAATGCCGAAAAGGCTCTTGAAGCCCTTAAGGAGATGCAATGTGAATCTG GAAAGGTTTTAAGGGATGGGTACATGATGCCGGAGTTGCCAGCTCGAGAGCTTGTCCCTGGTGACATAGTGGAACTGCGGGTTGGAGATAAAGTGCCGGC TGACATGAGAGTGGCAGTTTTGAAGACATCGACTTTGAGAGTTGAGCAGAGCTCATTGACTGGAGAGGCGATGCCTGTTCTGAAAGGCACTGCTCCCATA TTCATGGATGACTGTGAGTTGCAGGCTAAGGAAAATATGGTTTTTGCTGGCACAACTGTTGTTAATGGGAGCTGTATTTGCATTGTTATAAGCACTGGGA TGAAAACTGAGATTGGAAAAATTCAGAAGCAAATACACGAGGCTTCTCTGGAAGAGAGTGATACTCCACTGAAGAAGAAGTTGGATGAATTTGGTGGCAG GCTTACAACTGCTATTGGGTTTGCTTGCCTCGTTGTATGGATCATTAATTACAAAAATTTCCTCTCATGGGATGTTGTGGATGGATGGCCTACAAATATC AGATTTTCTTTTGAGAAATGCACCTATTATTTCAAGATAGCTGTTGCCTTAGCTGTAGCAGCAATTCCAGAAGGCCTCCCTGCTGTAATCACGACTTCTT TGGCTCTGGGTACCAGGAAAATGGCACAAAAGAATGCAATTGTGAGAAAGCTTCCAAGCGTGGAAACTTTAGGATGCACAACTGTAATTTGTTCAGATAA AACTGGGACTTTGACCACTAACCAGATGTCTGTAACAGAGTTCTTCACTTTGGGTGGAAAAACTACTTCTTCTCGAATTTTTCGTGTTGAAGGAACAACT TATGATCCTAAGGATGGTGGAATTGTTGACTGGACTTGCTACAATATGGATGCTAATTTGCAAGCCATGGCAGAGATATGTGCCGTCTGTAATGACGCTG GGATCTTTTGTGACGGTCGTCTTTTCAGGGCTACAGGTTTGCCTACTGAGGCTGCTCTAAAGGTTTTGGTTGAGAAGATGGGTGTCCCAGATGCTAAGGC AAGGGAAAAAATTCGGGATATGCAGCTTGCTGCAAACTATTTGATTGATCGTAGCACAGTGAAATTAGGGAGTTGCGAGTGGTGGACAAAAAGATTGAAA AGGCTTGCCACATTGGAATTTGATCGCATTCGTAAGTCAATGAGCATTATTGTACGGGAGCCCAATGGACAAAATCGACTTCTTGTCAAGGGAGCGGTCG AGAGTTTACTGGAGCGCAGTTCACATGTGCAGCTTGCAGATGGATCTGTTGTTCCTATAGATGAACCTTGTAGGCAACTATTATCTCTGAGACTTTTGGA GATGAGCTCTAAGGGGTTGCGGTGCTTGGGACTGGCATATAAGGATGACCTGGGGGAATTTTCAGACTACCATGCTGAAAATCATCCTGCGCACAAGAAG TTGCTCGATCCAGCTTACTACATGTCCATTGAAAGTGATTTGGTTTTTGTAGGAGTTGTTGGTCTAAGGGACCCCCCACGTGAGGAAGTGCACAAAGCAA TTGAGGATTGTAGAGATGCTGGGATTAGAGTTATGGTTATAACTGGAGATAACAAGTCTACTGCTGAGGCTATTTGTAAGGAAATCAAGTTATTTGATGA AGGTGAAGGTCTCAGGGGAAGAAGTTTTACTGGCAAAGAGTTTACTGCTCTTTCCCCTTCAGAACAAATGGAAATTTTGTCCAAGCCTGGAGGGAAGGTC TTCTCACGTGCTGAGCCAAGACACAAGCAAGAAATTGTAAGGATGCTGAAGGATATGGGTGAAATTGTGGCAATGACTGGAGATGGTGTCAATGATGCAC CTGCACTTAAACTCGCAGACATTGGAATTGCCATGGGAATAACAGGAACTGAGGTGGCAAAGGAAGCTTCTGATATGGTTTTGGCCGATGATAACTTTAG TTCCATTGTTTCAGCAGTTGCGGAGGGTCGCTCAATTTATAACAACATGAAAGCTTTTATCAGGTACATGATATCATCTAATGTTGGAGAGGTGATATCC ATTTTCTTAACTGCTGCATTGGGTATACCAGAGTGTATGATACCAGTACAGCTTTTGTGGGTGAATTTGGTTACTGATGGCCCGCCTGCTACAGCTCTTG GTTTTAATCCTGCTGATGTTGATATAATGCGGAAACCACCCCGCAAATGCAATGATGCCCTTATAAATTCCTGGGTTCTATTCCGCTACCTGGTCATCGG TTCTTATGTAGGAATTGCAACTGTTGGAATCTTTGTTTTGTGGTATACCCAGGCTTCTTTTCTGGGTATCAATCTCGTGAGCGACGGGCACACATTGGTT CAACTCTCCCAGCTTCGCAACTGGGGAGAGTGCCCCACATGGTCAAATTTCACCGTGACTCCATACCAGGTTGGTGGGGGACGCATGATCACCTTTTCAA ACCCTTGTGACTATTTCTCTGCTGGCAAAGTGAAGGCGATGACTCTGTCACTTTCTGTGTTGGTGGCGATTGAAATGTTCAATTCCCTAAATGCGCTTTC TGAAGACAATAGCTTGGTTACCATGCCACCTTGGAGGAACCCTTGGCTTTTAGTGGCCATGTCAGTCTCATTCGGATTGCATTGCGTTATACTGTATGTT CCGTTCCTGGCTGATGTGTTTGGTATCGTTCCATTGAGTCTGAAAGAATGGTTTCTAGTGATCTTGGTTTCAGCACCTGTAATTCTAATTGACGAGGCTC TTAAATTTGTTGGAAGGAGCGGAAGATGTAGAGCTAAGAAAGAGAAGATAGCGTGA
AA sequence Show only first row Show all	>Potri.014G101900.1 pacid=42764010 polypeptide=Potri.014G101900.1.p locus=Potri.014G101900 ID=Potri.014G101900.1.v4.1 annot-version=v4.1 MEEKPFPAWSWSVEQCLKEFNVKLDKGLSSYEVEKRRERYGWNELAKEKGKPLWWLVLEQFDDMLVKILLVAAFISFILAYLHAGESGEAGFEAYVEPLV IVLILALNAIVGVWQETNAEKALEALKEMQCESGKVLRDGYMMPELPARELVPGDIVELRVGDKVPADMRVAVLKTSTLRVEQSSLTGEAMPVLKGTAPI FMDDCELQAKENMVFAGTTVVNGSCICIVISTGMKTEIGKIQKQIHEASLEESDTPLKKKLDEFGGRLTTAIGFACLVVWIINYKNFLSWDVVDGWPTNI RFSFEKCTYYFKIAVALAVAAIPEGLPAVITTSLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGGKTTSSRIFRVEGTT YDPKDGGIVDWTCYNMDANLQAMAEICAVCNDAGIFCDGRLFRATGLPTEAALKVLVEKMGVPDAKAREKIRDMQLAANYLIDRSTVKLGSCEWWTKRLK RLATLEFDRIRKSMSIIVREPNGQNRLLVKGAVESLLERSSHVQLADGSVVPIDEPCRQLLSLRLLEMSSKGLRCLGLAYKDDLGEFSDYHAENHPAHKK LLDPAYYMSIESDLVFVGVVGLRDPPREEVHKAIEDCRDAGIRVMVITGDNKSTAEAICKEIKLFDEGEGLRGRSFTGKEFTALSPSEQMEILSKPGGKV FSRAEPRHKQEIVRMLKDMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSSIVSAVAEGRSIYNNMKAFIRYMISSNVGEVIS IFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMRKPPRKCNDALINSWVLFRYLVIGSYVGIATVGIFVLWYTQASFLGINLVSDGHTLV QLSQLRNWGECPTWSNFTVTPYQVGGGRMITFSNPCDYFSAGKVKAMTLSLSVLVAIEMFNSLNALSEDNSLVTMPPWRNPWLLVAMSVSFGLHCVILYV PFLADVFGIVPLSLKEWFLVILVSAPVILIDEALKFVGRSGRCRAKKEKIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00900		ATECA2, ECA2	ER-type Ca2+-ATPase 2, ARABIDO...		Potri.014G101900 [exp]	0	1	Pt-ECA2.1
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Potri.001G234200 [exp]	3.16	0.8660
AT5G24430			Calcium-dependent protein kina...		Potri.012G023300 [exp]	3.46	0.8787	CRK4
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037700 [exp]	5.56	0.8918	HNL.2
AT1G65810			P-loop containing nucleoside t...		Potri.008G143450 [exp]	7.48	0.8636
AT4G23420			NAD(P)-binding Rossmann-fold s...		Potri.003G128800 [exp]	8.66	0.8732
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.012G041900 [exp]	10.58	0.8421	NANN.1
AT1G27170			transmembrane receptors;ATP bi...		Potri.005G004100 [exp]	13.74	0.8597
AT5G67265			unknown protein		Potri.002G122800 [exp]	14.07	0.8340
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.002G028200 [exp]	14.28	0.8671	Pt-COL6.2
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G386300 [exp]	15.29	0.8375

Compare expression of checked genes

Potri.014G101900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.