Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 207 / 2e-55 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G20780 190 / 8e-50 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G68940 157 / 7e-39 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT3G46510 92 / 1e-18 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 91 / 3e-18 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 85 / 1e-16 PUB15 Plant U-Box 15 (.1) AT5G51270 78 / 2e-14 U-box domain-containing protein kinase family protein (.1) AT1G49780 77 / 3e-14 PUB26 plant U-box 26 (.1) AT4G36550 74 / 5e-13 ARM repeat superfamily protein (.1) AT3G07360 72 / 6e-13 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G175800 [exp] 1618 / 0 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 1048 / 0 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 376 / 5e-114 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.003G201000 [exp] 334 / 4e-100 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.001G024600 [exp] 322 / 8e-96 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.005G253400 [exp] 241 / 4e-67 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G007800 [exp] 235 / 8e-65 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G069501 [exp] 233 / 2e-63 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G136500 [exp] 194 / 2e-50 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005988 [exp] 1202 / 0 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 650 / 0 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10039402 [exp] 326 / 5e-95 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10034132 [exp] 300 / 1e-87 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 298 / 5e-87 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 224 / 2e-60 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 167 / 5e-42 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 159 / 3e-40 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10040659 [exp] 161 / 4e-40 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 151 / 5e-37 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.014G102000.2 pacid=42764502 polypeptide=Potri.014G102000.2.p locus=Potri.014G102000 ID=Potri.014G102000.2.v4.1 annot-version=v4.1 ATGATGGCATTAGATATGGTTACTGGTGTCTCTTCTGTTCCAGCTGCTGAGTGCCTTTCACAAATCGTGGAGGGCATGGTGGAGGTTGTATCTGCTGCCA ACAATGTGCTCATTAAGAAGGACAGTTTTACGGAACTTTCTGGTTACTTGGAAAGGATTGCACCTGTCCTAAAAGAGCTGAATAAGAAAGACATTGGTTG TTCTGGGAGCATAAACAATGCCATTGGGATCCTCAATCAGGAAATCAAAGCTGCAAAGCAGCTGACTGCTGATTGCACCAAGAGAAACAAAGTGTATCTC CTAATGAATTGCCGGACAATAACTAAGAGCCTAGAGGACATCACAAGAGAGATAAGCCGGGCCCTAGGTCTTATTCCTTTGGCCAATCTGGATCTTTCAA CCGGTCTAATCAAAGAGATTGAAAAGCTTCGCGATAGTATGCAGAGAGCTGAGTTCAAGGCTGCAATAGCAGAAGAAGAGATTTTGGCTAAAATTGAGTC TGGAATACAGGAGAGGAATGTTGATCGTTCTTATGCCAACAAGATACTGGCTCACATAGCTGAGGCTGTTGGGATCTCAACAGAGAGGTCTGCTTTGAAG AAAGAGTTTGAAGAATTCAAGAGTGAGATTGAAAATGCGCGGCTTAGGAAGGACCAGGCTGAAGCTATACAAATGGATCAGATAATTGCTTTGCTAGAAA GGGCAGACGCTGCTTCTTCTTCTAAGGAGAAAGAGATAAAGTATTCCACCAAACGGAAGTCTTTGGGTAGTCAGCCATTGGAACCTCTTCAGTCCTTTTA CTGCCCAATTACTCGGGATGTGATGGTGGACCCTGTGGAGACCTCTTCAGGCCAGACATTTGAGAGAAGTGCAATAGAAAAATGGTTAGCAGATGGGCAT GAAATGTGTCCTCTGACCATGACCCCCCTAGACACATCAATTTTAAGGCCTAACAAAACCCTGAGGGAATCAATAGAAGAATGGAAGGATAGAAACACCA TGATTACAATTGCTTCCATGAAATCAAAACTTGTGTATCAAGAACAAGAAGAAGAAGAAGAAGTGCTTCGTTGCCTGGAACAGTTAGAGGATCTCTGTGA ACAAAGAGAACAGCATCGGGAATGGGTGATCTTGGAGAATTATATACCACTTTTTATCCAGCTTCTTGGAGCAAAAAATCGTGATATAAGGAATCGTGCT CTTGTTGTCCTTTTGATTCTGGCAAAGGATAGTGATCATGCCAAGGAAAGAGTTGCAGATGTTGATAATGCAATCGAATCCATTGTTCGATCACTTGGAC GCCGTATTGGGGAAAGGAAGTTAGCCGTGGCATTATTGTTGGAGTTGTCAAAGTGTAACTTGGTAAGGGATGGCATTGGAAAGGTTCAGGGTTGTATTCT CCTCTTAGTGACTATGGCAAGCAGTGATGACAGTCAAGCTGCCACAGATGCCCAAGAGCTATTGGAGAATCTTTCATTCTCTGATCAAAACATCATACAA ATGACTAAAGCAAATTATTTCAGACATTTTCTGCAGCGTATATCCACAGGATCAGAAGAAGTGAAAACGATGATGGCATCAACTTTGGCAGAATTGGAGT TGACTGACCACAACAAAGCATCTTTGTTTGAAGGAGGTGCTCTGGGTCCACTTCTTCACTTGGTATCATGCGGTGATGTTCGGATGAAAAAAGTGGCAGT CAAAGCTCTTCAGAACCTATCAAGCTTACCTGCAAATGGCCTGCAGATGATTAAAGAAGGTGCAGTGCAGCCATTACTTGGCCTTCTCTTTCAGCACATC TCTTCATCCTCAAGTTTATGTGAGCTGGCGGCTGCCACAATTGTGCACCTCGCTCTATCAACAGTGTCTCAAGAATCCAGCCCAACACCGATTTCATTGT TGGAATCTGATAATGATACTTTCAGGCTCTTTTCTTTGATCAACTTGACGGGGTCTAATGTGCAACAAAACATTCTTCGAGCTTTCCATGCCTTGTGCCA GTCCCCATCAGCATTAAATATCAAGACCAAGTTGACAGAGTGTTCAGCCATGCAAGTATTGGTCCAGTTATGTGAGCGCGACGACAACCCTAATGTAAGA GTAAATGCTGTGAAGCTGTTATATTGTTTGGTAGAAGATGGTGATGAAGGCACCATATTAGAGCATGTGGGTCAGAAATGCCTCGAGACCTTGCTCCGGA TTATCCAATCTTCTAATCTTGAAGAAGAGATTGCTTCGTCAATGGGCATTATCTCAAACCTCCCAGAAAAGCCCCAGATCACTCAGTGGCTTCTGGATGC CGGGGCACTTCCTGTAATCTCCAGAATTCTCCCTGATAGCAAGCAGAATGATCCCCATAAAAATGTCTTAGTCGAAAATGCTGCTGGAGCCATGCGTCGT TTTACTGTTCCAACAAATCCAGAATGGCAAAAGAAAGTTGCAGAAGCTGGGATAATTCCTGTGCTAGTGCAGCTGCTAGACTTCGGAACCACCATGACAA AGAAATGTGCTGCAATTTCTCTGGCTCGTTTCTCTGAGAGCTCGCTTGAGCTTAGCCGGTCAATACCCAAGCGCAAGGGATTCTGGTGCTTCTCTGTTCC ACCAGAAACTGGCTGCGTGATTCATGGGGGAATCTGTGCTGTTGAATCATCCTTTTGCCTTGTGGAAGCTGATGCAGTCGAACCCCTTGTGAGGGTTCTT CGAGATCCAGATCCTGCAACCTGTGAGGCTTCTCTAGACGCCCTATTGACTCTGATTGAAGGTGTTAAACTTCAAAATGGTGGTAAGGTGCTCGCACAGG CAAATGCCATACAACCAATTGTTGGATTTCTTAGTTCTTCCTCCCCCATACTGCAGGAAAAGGCCCTAAACACTTTAGAAAGGATCTTTCGGCTGCCCGA GTTAAAACAGAAGTATGGGCCCTCTGCTCAAATGCCTTTGGTTGACCTGACACTGCGGGGTAACAGCAGCATGAAGTCTCTTTCAGCCAGAATACTTGCT CATTTGAATGTACTTCATGATCAGTCCTCTTACTTCTAA
AA sequence Show only first row Show all	>Potri.014G102000.2 pacid=42764502 polypeptide=Potri.014G102000.2.p locus=Potri.014G102000 ID=Potri.014G102000.2.v4.1 annot-version=v4.1 MMALDMVTGVSSVPAAECLSQIVEGMVEVVSAANNVLIKKDSFTELSGYLERIAPVLKELNKKDIGCSGSINNAIGILNQEIKAAKQLTADCTKRNKVYL LMNCRTITKSLEDITREISRALGLIPLANLDLSTGLIKEIEKLRDSMQRAEFKAAIAEEEILAKIESGIQERNVDRSYANKILAHIAEAVGISTERSALK KEFEEFKSEIENARLRKDQAEAIQMDQIIALLERADAASSSKEKEIKYSTKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWLADGH EMCPLTMTPLDTSILRPNKTLRESIEEWKDRNTMITIASMKSKLVYQEQEEEEEVLRCLEQLEDLCEQREQHREWVILENYIPLFIQLLGAKNRDIRNRA LVVLLILAKDSDHAKERVADVDNAIESIVRSLGRRIGERKLAVALLLELSKCNLVRDGIGKVQGCILLLVTMASSDDSQAATDAQELLENLSFSDQNIIQ MTKANYFRHFLQRISTGSEEVKTMMASTLAELELTDHNKASLFEGGALGPLLHLVSCGDVRMKKVAVKALQNLSSLPANGLQMIKEGAVQPLLGLLFQHI SSSSSLCELAAATIVHLALSTVSQESSPTPISLLESDNDTFRLFSLINLTGSNVQQNILRAFHALCQSPSALNIKTKLTECSAMQVLVQLCERDDNPNVR VNAVKLLYCLVEDGDEGTILEHVGQKCLETLLRIIQSSNLEEEIASSMGIISNLPEKPQITQWLLDAGALPVISRILPDSKQNDPHKNVLVENAAGAMRR FTVPTNPEWQKKVAEAGIIPVLVQLLDFGTTMTKKCAAISLARFSESSLELSRSIPKRKGFWCFSVPPETGCVIHGGICAVESSFCLVEADAVEPLVRVL RDPDPATCEASLDALLTLIEGVKLQNGGKVLAQANAIQPIVGFLSSSSPILQEKALNTLERIFRLPELKQKYGPSAQMPLVDLTLRGNSSMKSLSARILA HLNVLHDQSSYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.014G102000 [exp]	0	1
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Potri.005G189800 [exp]	1.41	0.8569
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	5.29	0.8539
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G034000 [exp]	6.92	0.8535	ATCNGC19.5
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.012G033600 [exp]	8.36	0.7958
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.012G131300 [exp]	8.94	0.8234	Pt-AAT1.1
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.009G024100 [exp]	13.11	0.8310	CNX2.1
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121000 [exp]	18.46	0.8202
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.003G054900 [exp]	19.62	0.8304
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.007G112700 [exp]	24.24	0.8269
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.015G095900 [exp]	25.49	0.8028	Pt-PPD3.1

Compare expression of checked genes

Potri.014G102000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.