Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09650 90 / 2e-21 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) AT4G00895 80 / 6e-18 ATPase, F1 complex, OSCP/delta subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087300 [exp] 94 / 2e-22 AT4G09650 227 / 9e-75 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Potri.013G117000 [exp] 86 / 8e-20 AT4G09650 247 / 8e-83 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012618 [exp] 158 / 2e-47 AT4G00895 83 / 2e-19 ATPase, F1 complex, OSCP/delta subunit protein (.1) Lus10012452 [exp] 86 / 1e-19 AT4G09650 250 / 5e-84 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Lus10020508 [exp] 86 / 2e-19 AT4G09650 248 / 5e-83 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [poplar] [flax] ATP_synthase PF00213 [poplar] [flax] OSCP ATP synthase delta (OSCP) subunit
Representative CDS sequence Show only first row Show all	>Potri.014G102100.1 pacid=42763479 polypeptide=Potri.014G102100.1.p locus=Potri.014G102100 ID=Potri.014G102100.1.v4.1 annot-version=v4.1 ATGGAACACACAATTTGTGGCTTTAGCTTTACTAGTGGCATAAATCTTATCGTCATCCCTCGTCCTAAAACCAAATCGGAGGCATCCCCAGAAGCACTAT TCAAATTTTCCACTCTCGCCATGGATACGATCTCAAGTTCCATTTCAACCCTCAAAGGCCCTGCCTTTCTGTCAACACTTCCTGAATTGCAACATTTAAG GACTCCTCACGTATCTCATCAACTCCCTCCTAATCTTACAACTAAACCCACCTCTTCAATCTCTAACAGAACCCCATCCAAGACTAAAACCTTATCTTTT AAGAATCTTAACCTTCCACTCTTTTCTAACATCTCTCAAAGCTCATCTCACAACTCATCTCCACATAGCCACAGAAACCCTGTCAGTGGCTATGCCGCCG CACTTGTAGACATAGCTCGATGCAAGAGTTCCCTTGACATAGTCCAAAATGATGTGCAGAAATTATTGAAGCTGCTTCAAAATGAGCAAATCCAAGCTGT TTTGGGTAGCCCGTTTGTGGGTGACAAAGAGAAGGGACAGGTAGTGAAGGAAGTGGCAAAGAGAGGTAAATTCAATAGATATTTGGTAGGTTTGGTGAAG ATGTTGATTGATAGAAATAAGGTGATGATCGTGAGTGATGTTTTGATGGAGTTTGAGAGTATATGTGATGAGTTGAGTGGGACAAGAGTGGTTTTGGTTC CGTCTCCTAAAAAGATGGAGGAAGATCAGTTGTTTTGGATTGCCAAGACTGTGCAGAATCTTACCGGGGCTATGAATGTTAAGGTAAAAAATTTCTTTGA TGAGAAGTTCCCAGCATTTGTTGCTTAA
AA sequence Show only first row Show all	>Potri.014G102100.1 pacid=42763479 polypeptide=Potri.014G102100.1.p locus=Potri.014G102100 ID=Potri.014G102100.1.v4.1 annot-version=v4.1 MEHTICGFSFTSGINLIVIPRPKTKSEASPEALFKFSTLAMDTISSSISTLKGPAFLSTLPELQHLRTPHVSHQLPPNLTTKPTSSISNRTPSKTKTLSF KNLNLPLFSNISQSSSHNSSPHSHRNPVSGYAAALVDIARCKSSLDIVQNDVQKLLKLLQNEQIQAVLGSPFVGDKEKGQVVKEVAKRGKFNRYLVGLVK MLIDRNKVMIVSDVLMEFESICDELSGTRVVLVPSPKKMEEDQLFWIAKTVQNLTGAMNVKVKNFFDEKFPAFVA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.014G102100 [exp]	0	1
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.013G108700 [exp]	1.00	0.9850
AT1G27385			unknown protein		Potri.001G056500 [exp]	2.44	0.9802
AT3G62410		CP12-2	CP12 DOMAIN-CONTAINING PROTEIN...		Potri.014G120700 [exp]	2.44	0.9808
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Potri.008G153400 [exp]	2.82	0.9786
AT2G41950			unknown protein		Potri.006G194600 [exp]	3.16	0.9739
AT4G35090		CAT2	catalase 2 (.1.2)		Potri.002G009800 [exp]	4.35	0.9698	CAT1,Pt-CAT1.4
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Potri.017G007300 [exp]	4.47	0.9785
AT3G04550			unknown protein		Potri.013G044900 [exp]	5.47	0.9766
AT1G29700			Metallo-hydrolase/oxidoreducta...		Potri.008G117600 [exp]	7.21	0.9717
AT4G11175			Nucleic acid-binding, OB-fold-...		Potri.006G241100 [exp]	7.48	0.9759

Compare expression of checked genes

Potri.014G102100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.