Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01200 332 / 2e-116 ATRAB-A3, AtRABA3 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) AT5G65270 281 / 1e-96 AtRABA4a RAB GTPase homolog A4A (.1) AT5G47960 281 / 1e-96 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT3G12160 276 / 9e-95 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT4G39990 272 / 6e-93 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G09630 250 / 2e-84 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT4G18800 249 / 4e-84 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT5G60860 249 / 8e-84 AtRABA1f RAB GTPase homolog A1F (.1) AT1G16920 248 / 1e-83 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT3G15060 246 / 7e-83 AtRABA1g RAB GTPase homolog A1G (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G175700 [exp] 423 / 3e-152 AT1G01200 333 / 4e-117 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) Potri.005G073000 [exp] 281 / 1e-96 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.001G270100 [exp] 281 / 1e-96 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.007G096000 [exp] 281 / 2e-96 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.006G057700 [exp] 271 / 1e-92 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.016G050400 [exp] 270 / 3e-92 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.004G061000 [exp] 258 / 1e-87 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.003G004100 [exp] 256 / 1e-86 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.011G070300 [exp] 255 / 2e-86 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023153 [exp] 279 / 1e-95 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10000637 [exp] 278 / 3e-95 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 275 / 9e-94 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1) Lus10035924 [exp] 274 / 1e-93 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10012032 [exp] 265 / 3e-90 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10016284 [exp] 264 / 8e-90 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10014732 [exp] 261 / 3e-88 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10002725 [exp] 259 / 1e-87 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10023829 [exp] 261 / 2e-86 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021023 [exp] 263 / 9e-85 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.014G102200.1 pacid=42763897 polypeptide=Potri.014G102200.1.p locus=Potri.014G102200 ID=Potri.014G102200.1.v4.1 annot-version=v4.1 ATGAACCAAGAGATGAATGGTGTTGATACTGAGATTGATCAGAACCACCAAGAGAATGTGCAAGAGAAAATCGATTATGTGTTTAAGGTGGTGGTGATCG GTGACTCTGCAGTAGGCAAGACGCAAATTCTTTCCAGGTTTACCAAGAATGAATTCTGCTTTGATTCAAAGTCTACCATCGGTGTCGAGTTCCAGACTAG GACTGTCATCATTAAAGACAAGGTCATCAAGGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACCGGGCAGTGACAAGCGCATACTATAGAGGGGCA TTAGGGGCTATGTTAGTCTACGACACTACCAAGAGACCAACGTTTGATCATGTGGCTAGGTGGGTGGAGGAGCTCCGAGCCCATTCTGACAACTCAATTG TGATCATGCTGATTGGAAACAAGGCTGATCTTGTGGACCTCAGGGCAGTTCCAACAGAAGACGCGGTGGAATTTGCAGAGGAGCAAGGCCTATTTTTTTC TGAGACATCAGCCCTTAGTGGTGACAATGTGGACGGTGCATTTTTTAGGCTGCTAGAAGAAATTTACGGTGTGATTTGTAAGAAGTCATTGGAATGTGGC AATGGAAATCCCCATGCTGCTGATGCCATAACGCTTAGAGGTTCTAAGATTGATGGCATGTCAGGGACTGATCTGGAGATTAGTGAGATGAAGAAATTAT CTGCTTGCTCGTGTTGA
AA sequence Show only first row Show all	>Potri.014G102200.1 pacid=42763897 polypeptide=Potri.014G102200.1.p locus=Potri.014G102200 ID=Potri.014G102200.1.v4.1 annot-version=v4.1 MNQEMNGVDTEIDQNHQENVQEKIDYVFKVVVIGDSAVGKTQILSRFTKNEFCFDSKSTIGVEFQTRTVIIKDKVIKAQIWDTAGQERYRAVTSAYYRGA LGAMLVYDTTKRPTFDHVARWVEELRAHSDNSIVIMLIGNKADLVDLRAVPTEDAVEFAEEQGLFFSETSALSGDNVDGAFFRLLEEIYGVICKKSLECG NGNPHAADAITLRGSKIDGMSGTDLEISEMKKLSACSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.014G102200 [exp]	0	1
AT4G29360			O-Glycosyl hydrolases family 1...		Potri.002G007300 [exp]	1.00	0.9485
AT2G25270			unknown protein		Potri.018G023200 [exp]	2.82	0.9304
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.015G059100 [exp]	5.29	0.9053
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.002G093100 [exp]	6.00	0.9159	Pt-SAH7.1
AT3G20015			Eukaryotic aspartyl protease f...		Potri.005G063000 [exp]	6.00	0.8535
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Potri.004G058400 [exp]	7.74	0.8589
AT5G23400			Leucine-rich repeat (LRR) fami...		Potri.010G040200 [exp]	8.36	0.8541
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.018G132100 [exp]	9.59	0.8278
AT4G05520		ATEHD2	EPS15 homology domain 2 (.1.2)		Potri.011G022300 [exp]	9.79	0.8738
AT4G03100			Rho GTPase activating protein ...		Potri.014G135570 [exp]	11.22	0.8884

Compare expression of checked genes

Potri.014G102200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.