Plant FIBer expression Database

Potri.014G102466 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46630 113 / 1e-27 unknown protein
AT1G75260 52 / 5e-07 oxidoreductases, acting on NADH or NADPH (.1)
AT1G63310 46 / 9e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G175400
[exp]
324 / 5e-107 AT2G46630 107 / 3e-25 unknown protein
Potri.011G149100
[exp]
52 / 9e-08 AT1G63310 95 / 2e-25 unknown protein
Potri.001G452900
[exp]
43 / 0.0001 AT1G63310 92 / 3e-24 unknown protein
Potri.002G034700
[exp]
44 / 0.0002 AT1G75260 183 / 4e-51 oxidoreductases, acting on NADH or NADPH (.1)
Potri.005G228400
[exp]
42 / 0.0006 AT1G75260 103 / 2e-23 oxidoreductases, acting on NADH or NADPH (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030217
[exp]
115 / 5e-28 AT2G46630 51 / 1e-06 unknown protein
Lus10005994
[exp]
115 / 7e-28 AT2G46630 / unknown protein
Lus10012616
[exp]
62 / 1e-10 AT1G75260 71 / 3e-14 oxidoreductases, acting on NADH or NADPH (.1)
PFAM info
Representative CDS sequence
>Potri.014G102466.1 pacid=42764052 polypeptide=Potri.014G102466.1.p locus=Potri.014G102466 ID=Potri.014G102466.1.v4.1 annot-version=v4.1
ATGTCAAACCAACCTGCCCCGCCTCGCCCATGGTTCCGTTTGCCATCAATAGCTCGGCCAGCTGCCCCTGCTCCAACCCCAACTCCAGAGTCGCCTCCTC
CGCAACCCCGTCCAGCTCTTGCTCGACCTTCATTTAGGCTAACTGCTCTGCCTCAGCCTGTGCCAACACAGCCTCAAGAACCCACTCCCGCACCACCTCC
TTCTGCTGCGACAGTGCCACCTGCCGCTGGTATTGCTTCAGTTCCAACATCTCCAGCTGTAAAAGCTGCAGGTGGTGTTGCATCATTACCAACATCCCCA
GCTCCAAGGGCACCTGCTCCTTCATCTTCAGTGCCAACTTCTCCTGTCCCAACTTCCACAGTGTTTCCACCCACTACTTTTTCACTTCCACCTTCTCCAA
CCCTCAAACCATCACGTACTTCGTCTTCAGTTCCTACCTCTCCAGCTTCTACACCATCTCCATCTGCTTCCGTCTCAACTTCTCCTTCCACTAGGCCAGT
GTCAACCACATCCTCTGCGCCAAGCTCTCCTGCCCCTAAGCCAGCGACAGTCACATCCTCGGTGCCAAATTCTCCAGCCACTAAAGCTGTAACCACCAGT
GCAGCTCGTGTGCCTGGCCCTACACCATCTCTAAGAATCATCAAGCCTACAGTTCAAACCCCACCCCAGTCACCTAAGCCTAAGCCCACTGCTCCACCAC
CTTCTCCTCTAACACGTCCACCTTCCCGAGTAAAATCTGACGCTGATCTCGAACCCAAGATTCCATTAGTAGCAGAGCAAAAAACTGTGTTGGTTCAGAA
GATTATTGACAAGCCTAAGGAGGCAGGTGATTCGCTGAGGGCCTTTGCAGACAGTCTCAGCTCTGGCATTGCGCGTCTTGCAAAGCCAGAAACTGCCAAA
GATCAAACAAAGGAGAAAGGTAGCGGCAAGAAGATTTCTTCAGATTCTGAGGATGTTGGCATGAGGGTAATTACAATTGCTGGTGAAAACAAAGGTGCTT
TCATGGAAGTAATCCGTTCTCCGAAGAAACATTTTTTTGAAGGCAATTCTCATACTCTCAACAAGAAGGGTAATCCTAGAAGTGAAGGCAGTGATTGGGG
AAGCCAGAGCAGCAGTGGTGAAGAAGGCAACAGCAAGAAGGACAAGAACCACAAAGGAAGATCAATGGGGCCATCTCCTATGAGTGCATTTATGAACAGT
AATGTGCAAGGTGTTAACAACTCAATCGTTTACAATTCTTCATGCAGTCATCATGATCCTGGGGTGCATGTTGCTCTCTCCAGAAAACCTTCTGGTTCTG
CTGGATTCCATGTCAAGGACCGTGGCAATGGCTACCAAAGTTGA
AA sequence
>Potri.014G102466.1 pacid=42764052 polypeptide=Potri.014G102466.1.p locus=Potri.014G102466 ID=Potri.014G102466.1.v4.1 annot-version=v4.1
MSNQPAPPRPWFRLPSIARPAAPAPTPTPESPPPQPRPALARPSFRLTALPQPVPTQPQEPTPAPPPSAATVPPAAGIASVPTSPAVKAAGGVASLPTSP
APRAPAPSSSVPTSPVPTSTVFPPTTFSLPPSPTLKPSRTSSSVPTSPASTPSPSASVSTSPSTRPVSTTSSAPSSPAPKPATVTSSVPNSPATKAVTTS
AARVPGPTPSLRIIKPTVQTPPQSPKPKPTAPPPSPLTRPPSRVKSDADLEPKIPLVAEQKTVLVQKIIDKPKEAGDSLRAFADSLSSGIARLAKPETAK
DQTKEKGSGKKISSDSEDVGMRVITIAGENKGAFMEVIRSPKKHFFEGNSHTLNKKGNPRSEGSDWGSQSSSGEEGNSKKDKNHKGRSMGPSPMSAFMNS
NVQGVNNSIVYNSSCSHHDPGVHVALSRKPSGSAGFHVKDRGNGYQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46630 unknown protein Potri.014G102466
[exp]
0 1
AT3G22740 HMT3 homocysteine S-methyltransfera... Potri.010G083600
[exp]
5.29 0.9043 Pt-HMT3.2
AT2G27140 HSP20-like chaperones superfam... Potri.012G070100
[exp]
12.08 0.8793
AT2G15680 AtCML30 calmodulin-like 30, Calcium-bi... Potri.009G102500
[exp]
12.84 0.9417
AT1G73370 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE S... Potri.004G081300
[exp]
15.81 0.9433
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Potri.006G048200
[exp]
42.98 0.8946 ZOG1.17
AT1G68320 MYB BW62C, BW62B, A... myb domain protein 62 (.1) Potri.008G122100
[exp]
45.67 0.9100
Potri.001G248708
[exp]
47.83 0.9092
AT5G35200 ENTH/ANTH/VHS superfamily prot... Potri.018G100801
[exp]
64.96 0.8988
AT1G68765 IDA INFLORESCENCE DEFICIENT IN ABS... Potri.013G074000
[exp]
68.41 0.8851
AT5G59910 HTB4 Histone superfamily protein (.... Potri.008G030600
[exp]
82.94 0.8887

Potri.014G102466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.