Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01180 372 / 2e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G177500 [exp] 478 / 3e-172 AT1G01180 383 / 4e-134 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010109 [exp] 389 / 8e-137 AT1G01180 397 / 1e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030709 [exp] 332 / 4e-114 AT1G01180 350 / 3e-121 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013195 [exp] 330 / 1e-113 AT1G01180 353 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012612 [exp] 192 / 3e-62 AT1G01180 181 / 3e-58 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13578 [poplar] [flax] Methyltransf_24 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.014G103800.2 pacid=42763572 polypeptide=Potri.014G103802.1.p locus=Potri.014G103800 ID=Potri.014G103800.2.v4.1 annot-version=v4.1 ATGAATGAAGACCGATTACCATCTCCCCGCCATCACCACACCAACAATAAGAAGAAAACAAGATTCGGTTACCTATCAGCTCCAAGCTCCTGCTCTTCAC TGCGGCCTTTACCATCCCCAGAAATCTTGAAGGTCGACGGTTATGACCTCAAAAACCAACTCGACAACTTCCGGGTCAAGACTCACTGTGCCAAACCCCT TCCACCCCAACTTGTCCACGAAACAATTCTAGACCGAGTTTACAACGCCACGTCGCCATATGACAATTTCCCTCCTGCGCACGTTAGAGGCCTCCTCAGA GATAAAAGACTCAAGGGATGGGGCTCATACGGTGAAGTTTTTGAACACCTTATCCAGAAAGTGAAGCCTAAAGTGATTATTGAAGTGGGTACTTTCTTGG GCGCTTCAGCTCTCCACATGGCCGAGTTGACTCGAAAACTCGGGCTCGACTCACTCATTCTTTGCATTGACGATTTTCGCGGGTGGCTCGGGTTCCGTGA CCTGGTTGGTTTTGTTAATATGGTAAACGGTGACGTTCTGTTGCTGTATCAGTTCATGCAGAATGTTGTTCAAAACAATGCCACAGGGTCGGTTTTGCCC ATACCCTTTTCGAGCGGGTCAACATTGGAGATATTATGTGAGTGGGGTGTGTTTGGTGATTTGATTGAGATTGATGCGGGTCATGATTTTAACTCTGCCT GGGCGGATATTAATCGGGCCTACCGCATCTTAAGACCCGGTGGGGTAATTTTTGGACACGATTATTTTACTGCAGCGGACAATAGAGGCGTGAGGAGAGC AGTAAATTTGTTTGCTCAAATGAACGGGCTTAAGATCCAAACTGATGGGCAACACTGGGTGATTGACTCCGCCTGA
AA sequence Show only first row Show all	>Potri.014G103800.2 pacid=42763572 polypeptide=Potri.014G103802.1.p locus=Potri.014G103800 ID=Potri.014G103800.2.v4.1 annot-version=v4.1 MNEDRLPSPRHHHTNNKKKTRFGYLSAPSSCSSLRPLPSPEILKVDGYDLKNQLDNFRVKTHCAKPLPPQLVHETILDRVYNATSPYDNFPPAHVRGLLR DKRLKGWGSYGEVFEHLIQKVKPKVIIEVGTFLGASALHMAELTRKLGLDSLILCIDDFRGWLGFRDLVGFVNMVNGDVLLLYQFMQNVVQNNATGSVLP IPFSSGSTLEILCEWGVFGDLIEIDAGHDFNSAWADINRAYRILRPGGVIFGHDYFTAADNRGVRRAVNLFAQMNGLKIQTDGQHWVIDSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01180			S-adenosyl-L-methionine-depend...		Potri.014G103800 [exp]	0	1
AT1G13940			Plant protein of unknown funct...		Potri.006G262600 [exp]	2.82	0.9609
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.002G230000 [exp]	4.00	0.9540	Pt-GLUR3.3
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.014G155100 [exp]	5.19	0.9381
AT2G46420			Plant protein 1589 of unknown ...		Potri.002G169900 [exp]	8.48	0.9455
AT1G76520			Auxin efflux carrier family pr...		Potri.001G456300 [exp]	8.94	0.9374
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023788 [exp]	9.48	0.9508
AT2G05810			ARM repeat superfamily protein...		Potri.014G158700 [exp]	10.19	0.9212
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024101 [exp]	11.22	0.9456
AT5G65500			U-box domain-containing protei...		Potri.007G011500 [exp]	12.96	0.9286
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024228 [exp]	15.09	0.9354

Compare expression of checked genes

Potri.014G103800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.