Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00840 298 / 3e-101 DHHC-type zinc finger family protein (.1) AT3G60800 256 / 1e-84 DHHC-type zinc finger family protein (.1) AT4G22750 226 / 9e-73 DHHC-type zinc finger family protein (.1.2) AT4G22753 217 / 3e-66 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT3G09320 95 / 1e-22 DHHC-type zinc finger family protein (.1) AT5G04270 93 / 4e-22 DHHC-type zinc finger family protein (.1) AT4G24630 77 / 7e-16 DHHC-type zinc finger family protein (.1) AT5G50020 75 / 7e-15 DHHC-type zinc finger family protein (.1.2) AT3G56930 71 / 1e-13 DHHC-type zinc finger family protein (.1.2) AT3G56920 71 / 1e-13 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G069200 [exp] 265 / 5e-88 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 255 / 4e-84 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 246 / 1e-80 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 236 / 1e-76 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 97 / 2e-23 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 96 / 7e-23 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 87 / 1e-19 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 85 / 2e-18 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 85 / 2e-18 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002694 [exp] 330 / 1e-112 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10024561 [exp] 256 / 2e-84 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 253 / 3e-83 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10030211 [exp] 157 / 5e-48 AT4G00840 159 / 5e-49 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 100 / 3e-24 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 98 / 1e-23 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10009291 [exp] 82 / 1e-18 AT3G60800 202 / 3e-65 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 82 / 1e-17 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 82 / 4e-17 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 82 / 5e-17 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.014G104000.4 pacid=42762304 polypeptide=Potri.014G104000.4.p locus=Potri.014G104000 ID=Potri.014G104000.4.v4.1 annot-version=v4.1 ATGGAAATAAACGTATTCAAATTATGTTCTGGCCTCAAAGTCCTCGGCTACTTAATGATCCTTCTAGTTGCCGCCATCATCGCCGTCTCATACCACGCCG TTGTAATTGTTACCTGTGGCCCACAGTTACTTCGCGGTGGAGCCCATTCTGTTTTGGCTTTTGCTATTATCATGATCTTTCATTTTCTGCTTATAATGCT ATTGTGGAGCTATTTTACGGTGCTTTCCAAGGACCCTGGTTCTGTGCCTGAAAATTGGAGAGCTGTACTTCCAGAGGAGGCTTTGGAGACTGGTTCTTCA TTGAATGATAGGTCAGATTGTGTAGTTGCTACTGATGGATTGGATCGCAGAGCGTTTTGCAATCACTGCGAGAATGGAAAGCCGCCGCGTTGTCATCATT GCTCTGTTTGCCAAAGATGTGTTCTCAAGATGGATCACCATTGTGTTTGGGTGGTGAATTGTGTTGGAGCACGTAACTACAAGTTTTTTCTTCTTTTCTT GCTATACACATTCATGGTGACGACAATGGATACTCTAGTATTGTTGCCTGGTTTCATCAACTTCTTCGGCAAAGCCAAGAATCATTCCAGCTCTCCCGGT GATCTAGCAGTCATCTTTTTGGCTTTTGTTCTTAATTTGGCTTTTGCTCTCAGTCTTCTTTGTTTCCTGGTTATGCACGCATCTCTTGTATCAAGCAACA CCACCTCAATAGAGGTTTATGAGAAGAAAGGAGCAGCCAGGTGGAAGTACGACTTAGGCAGGAAGAAGAATTTTGAACAGGTTTTTGGCACAAAGAAGGC ACTGTGGTTCTTTCCATTATTCTCCAAGGAGGATGTGGATAAAATACCTGCACTTCATGGCCTAGATTTTCCAATACGCGCAGATCTTGAATCCTGA
AA sequence Show only first row Show all	>Potri.014G104000.4 pacid=42762304 polypeptide=Potri.014G104000.4.p locus=Potri.014G104000 ID=Potri.014G104000.4.v4.1 annot-version=v4.1 MEINVFKLCSGLKVLGYLMILLVAAIIAVSYHAVVIVTCGPQLLRGGAHSVLAFAIIMIFHFLLIMLLWSYFTVLSKDPGSVPENWRAVLPEEALETGSS LNDRSDCVVATDGLDRRAFCNHCENGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYKFFLLFLLYTFMVTTMDTLVLLPGFINFFGKAKNHSSSPG DLAVIFLAFVLNLAFALSLLCFLVMHASLVSSNTTSIEVYEKKGAARWKYDLGRKKNFEQVFGTKKALWFFPLFSKEDVDKIPALHGLDFPIRADLES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00840			DHHC-type zinc finger family p...		Potri.014G104000 [exp]	0	1
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Potri.004G050800 [exp]	5.47	0.8443	SYP61.1
					Potri.005G070800 [exp]	9.05	0.7310
AT2G27060			Leucine-rich repeat protein ki...		Potri.009G159101 [exp]	16.88	0.7768
AT3G57690		AGP23, ATAGP23	ARABINOGALACTAN-PROTEIN 23, ar...		Potri.016G052001 [exp]	17.20	0.7773
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G257300 [exp]	21.35	0.7618
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.005G010600 [exp]	21.49	0.7713
AT1G77420			alpha/beta-Hydrolases superfam...		Potri.010G124000 [exp]	24.73	0.7104
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.010G223300 [exp]	27.11	0.7349
AT3G17900			unknown protein		Potri.008G194632 [exp]	28.10	0.7633
AT2G47010			unknown protein		Potri.002G187700 [exp]	28.28	0.6802

Compare expression of checked genes

Potri.014G104000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.