Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CIPK9.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01140 688 / 0 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT1G30270 624 / 0 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT2G26980 610 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 591 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT4G24400 499 / 8e-176 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G35410 492 / 6e-173 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT5G45820 436 / 6e-151 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G30960 434 / 4e-150 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G10930 427 / 2e-147 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT4G18700 424 / 1e-145 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G177900 [exp] 811 / 0 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G119200 [exp] 634 / 0 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.006G062800 [exp] 634 / 0 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.001G222600 [exp] 631 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 619 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.018G130500 [exp] 498 / 4e-175 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 487 / 4e-171 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G186200 [exp] 456 / 4e-159 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 450 / 2e-156 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030210 [exp] 753 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10002692 [exp] 750 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10042816 [exp] 635 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 634 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10022590 [exp] 551 / 0 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10019411 [exp] 510 / 4e-180 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10021488 [exp] 486 / 1e-171 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10032822 [exp] 474 / 8e-166 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10021852 [exp] 446 / 7e-155 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 444 / 4e-154 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.014G104200.5 pacid=42764580 polypeptide=Potri.014G104200.5.p locus=Potri.014G104200 ID=Potri.014G104200.5.v4.1 annot-version=v4.1 ATGAGTGCTAAGGGACAGGGGACGAGAACACGAGTAGGTAAGTACGAGTTAGGGAAGACCATAGGTGAAGGAAGCTTTGCCAAGGTCAAGGTCGCTAAAA ATGTTGAAACCGGTGATGTTGTTGCCATTAAAATTCTCGATCGTGAGCAAGTCCTCCGTCACAAGATGGTCGAACAGTTAAAAAGAGAAATATCAACAAT GAAGCTGATTAAACATCCCAATGTCATCAAGATTTTTGAGGTCATGGCAAGCAAAACTAAGATTTACATTGTTATCGAGTTTGTTGACGGAGGAGAGCTC TTTGACAAGATTGCTAAGCATGGGAGACTTAGAGAGGATGAAGCCAGGAGGTATTTCCAGCAGCTTATTAATGCCGTGGATTACTGCCACAGTAGAGGCG TTTTCCATAGAGATCTGAAGCCTGAGAACCTTCTTCTTGATTCACACGGTGTTCTTAAAGTCTCGGATTTTGGATTGAGTGCACTGTCACAACAATTGCA GGGTGATGGGCTGCTTCACACTGCATGTGGAACACCAAATTATGTCGCACCTGAGGTTCTCAAAGACAAAGGTTATGATGGCACAGCATCTGATGTATGG TCTTGTGGGGTCATTCTCTATGTACTTATGGCTGGATACTTGCCTTTTGATGAGACAAGTCTTATGGCCTTATACTTAAAAATCTGCAGTGCTGATTTCA CATTTCCATCTTGGTTTTCATCTGGTGCAAAGAAACTGATAAAGCGTATTCTTGACCCGGAGCCTCTTACAAGGATAACAGTTGCTGAGATTATAGAAGA TGAATGGTTCAAGAAAGGATACAGGCCACCACAATTCGAGCAGGAAGAGCATGTAAATGTAGATGATGTTGATGCTGTTTTTAATGATTTGAAGGAACAT CTTGTTACAGAAAAGAAGAAGAAACCTGCGTCGATGAATGCATTCGAGCTTATTTCTAAGACACAGGGATTTAGCCTTGAGAATTTGTTCGGGAAGCAGG CAGGTTTTGTGAAACGAGAAACCCGTATTGCTTCTCATAGCCCCGCAAATGAAATTATGTCTAGAATTGAGGAAGCTGCAAAGCCTCTGGGGTTTAATGT CGACAAACGAAACTACAAGATGAAGCTGAAAGGAGACAAAGGTGGGAGGAAGGGCCAACTCTCTGTAGCAACTGAGGTGTTTGAGGTAGCTCCCTCTTTG CACATGGTGGAGCTCCGGAAAATTGGTGGTGATACGCTGGAGTTTCACAATTTCTACAAGAGTTTCTCGTCAGGTTTAAAGGATGTAGTCTGGAAATCTG ATCAAACTATAGAAGGATTAAGGTCATAG
AA sequence Show only first row Show all	>Potri.014G104200.5 pacid=42764580 polypeptide=Potri.014G104200.5.p locus=Potri.014G104200 ID=Potri.014G104200.5.v4.1 annot-version=v4.1 MSAKGQGTRTRVGKYELGKTIGEGSFAKVKVAKNVETGDVVAIKILDREQVLRHKMVEQLKREISTMKLIKHPNVIKIFEVMASKTKIYIVIEFVDGGEL FDKIAKHGRLREDEARRYFQQLINAVDYCHSRGVFHRDLKPENLLLDSHGVLKVSDFGLSALSQQLQGDGLLHTACGTPNYVAPEVLKDKGYDGTASDVW SCGVILYVLMAGYLPFDETSLMALYLKICSADFTFPSWFSSGAKKLIKRILDPEPLTRITVAEIIEDEWFKKGYRPPQFEQEEHVNVDDVDAVFNDLKEH LVTEKKKKPASMNAFELISKTQGFSLENLFGKQAGFVKRETRIASHSPANEIMSRIEEAAKPLGFNVDKRNYKMKLKGDKGGRKGQLSVATEVFEVAPSL HMVELRKIGGDTLEFHNFYKSFSSGLKDVVWKSDQTIEGLRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.014G104200 [exp]	0	1	CIPK9.2
AT2G43400		ETFQO	electron-transfer flavoprotein...		Potri.017G027500 [exp]	1.41	0.8977
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.009G024100 [exp]	3.16	0.8716	CNX2.1
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.018G033400 [exp]	10.00	0.8344	2OGox9
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	15.00	0.8581
AT3G47570			Leucine-rich repeat protein ki...		Potri.015G037400 [exp]	15.81	0.8476
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096400 [exp]	17.32	0.8278
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.002G154700 [exp]	18.08	0.8689	Pt-ANL2.1
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.001G189800 [exp]	19.44	0.8343
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	21.07	0.8602
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120600 [exp]	21.90	0.8128

Compare expression of checked genes

Potri.014G104200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.