Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00820 433 / 6e-147 IQD17 IQ-domain 17 (.1) AT1G01110 429 / 3e-145 IQD18 IQ-domain 18 (.1.2) AT4G10640 222 / 2e-66 IQD16 IQ-domain 16 (.1) AT2G26180 115 / 1e-27 IQD6 IQ-domain 6 (.1) AT3G49260 106 / 2e-24 IQD21 IQ-domain 21 (.1.2.3) AT3G52290 101 / 9e-23 IQD3 IQ-domain 3 (.1) AT5G03040 100 / 3e-22 IQD2 IQ-domain 2 (.1.2.3) AT3G59690 97 / 4e-21 IQD13 IQ-domain 13 (.1) AT3G22190 96 / 5e-21 IQD5 IQ-domain 5 (.1.2) AT1G72670 94 / 3e-20 IQD8 IQ-domain 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178500 [exp] 749 / 0 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.011G153400 [exp] 424 / 5e-143 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.001G448100 [exp] 414 / 5e-139 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.015G005900 [exp] 323 / 4e-104 AT4G00820 277 / 1e-86 IQ-domain 17 (.1) Potri.012G022500 [exp] 292 / 3e-92 AT1G01110 242 / 2e-73 IQ-domain 18 (.1.2) Potri.006G226600 [exp] 129 / 4e-32 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.010G218100 [exp] 122 / 1e-29 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 107 / 8e-25 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.003G042700 [exp] 105 / 3e-24 AT1G72670 223 / 3e-68 IQ-domain 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012608 [exp] 383 / 5e-127 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10010104 [exp] 377 / 2e-124 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10008269 [exp] 246 / 3e-74 AT1G01110 317 / 8e-102 IQ-domain 18 (.1.2) Lus10033237 [exp] 145 / 1e-38 AT1G01110 183 / 8e-55 IQ-domain 18 (.1.2) Lus10041419 [exp] 108 / 3e-25 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10013522 [exp] 105 / 4e-24 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10013362 [exp] 101 / 7e-23 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10014870 [exp] 102 / 2e-22 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10018115 [exp] 99 / 1e-21 AT3G49260 358 / 8e-120 IQ-domain 21 (.1.2.3) Lus10004107 [exp] 99 / 1e-21 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.014G104600.3 pacid=42762515 polypeptide=Potri.014G104600.3.p locus=Potri.014G104600 ID=Potri.014G104600.3.v4.1 annot-version=v4.1 ATGGGGAAGAAGGGAGGTAGCTCATGGTTGACCGTTGTGAAAAGGGCTTTTAGATCTCCTAATAAAGAAAATGACAAGAGAACTGCTGGGACTACAGGCC ATGACCAAGAAGAAGATGAAGAAAAGAAGAGAGAGAAGAGGAGGTGGCTGTTTAGGAAACCTACGAATCAAGAAACAGTGACACAACAGATCCTATCAAA GGCAGGAAATGTCAAGGCCTCCACGGGTGGTGGTGGAGGTGCACCGACAGACCATGTGTCGGCAGCTGCAGCAGCTGAGCAAAGGCATGCAATTGCTGTA GCTGTTGCCACTGCAGCTGCAGCTGAAGCTGCTGTAGCCACTGCCCAGGCGGCCGTGGAGGTGGCTAGGCTCACTAGGCCTTCGTATCACCCTAGAGAAC GTTCCGCTGCCATTGTCATTCAAACCGCTTTTAGAGGATACCTGGCAAGGCGGGCTCTTCGCGCTCTTAAAGGGCTAGTGAAGTTGCAAGCTTTAGTGAG GGGACACAATGTGAGAAAGCAGGCCAAGATGACCCTGAGATGCATGCAAGCTCTGGTTCGAGTGCAGGCTCGAGTACTTGACCAACGCATGAGGCTTTCA CATGAAGGCAGCAGGGAATCTGCATTCAGTGACACCAATAGCGTGTTTGAATCGCGTTATCTTCAAGAAATTTCAGAAAGAAAATCGATGTCAAGAGACG GCAGTAGCATCGCAGATGATTGGGATGATCGGCCACGCACAATTGAGGAAGTCAAGGCCATGTTGCAACGCAGGAAAGACGTTGCATTCAAGCGTGAGAA GGCCTTATCTCAAGCTTTCTCTCAACAGATATGGAGAAACCGTAGGAGCCCATCAATGGGCAATGAAGGTGAGCTCCAAGAAAGATCACAATGGCTTGAT CATTGGATGCCTGCAAAGCCGTGGGACAATAGCAGCAGAGCACGAGCCTCAACTGATCAAAGAGACCCCATCAAAACTGTAGAAATTGAAACCTCCCAAC CTTGCTCATATTTAGCTCCTAATTTTGGAAGAACGAACCAAAACCAATATCACGAACACCAGAGATCCAATTCAATAAACAATGGTGTTACACGCTCGGC TCCTCCTCCACTCCATAGAGCTCATCAAGATGCTTCTCTCCGCCACTCTCCTATTACACCCTCCCCGTCAAGAACTAGGCCTCTTCAGGTTCGTTCAGCG AGTCCCCGATGTGCTAGAGAAGATAGAAGCTGTAATTCCTCTCGAACACCGAGTTTAAGGTCCAATTACCTCTATAATGGCAATCTGAAACAACATGGAA TCAGGGGTGGTGCTGCTAGTGTTAGTGGAAATGCTAATGCTACATTGCCAAATTACATGGCTACAACTGAGTCCGCCAAGGCTAGATTGAGATCACAGAG TGCGCCAAGGCAAAGACCATCAACACCAGAGCGAGACAGGGTTGGGTCTGCAAGAAAACGGCTTTTGTATCCTGTCCCCGACCCTTACGGTGTCGGGATG GGTTATGGTGGTGTTGGTTACGGGCATGGTTTCAGGAGTCCCAGCTTTAAAAGTGTAAGTGGTTCACATTTTGGTGGATTAGAACAACAATCTAACTATT CTTCTTGCTGCACTGATACCTTCGGTGCTGAGATTTCCCCTTCTTCAACGAGCGACCAGAGAAGGTGGTTGAGATAA
AA sequence Show only first row Show all	>Potri.014G104600.3 pacid=42762515 polypeptide=Potri.014G104600.3.p locus=Potri.014G104600 ID=Potri.014G104600.3.v4.1 annot-version=v4.1 MGKKGGSSWLTVVKRAFRSPNKENDKRTAGTTGHDQEEDEEKKREKRRWLFRKPTNQETVTQQILSKAGNVKASTGGGGGAPTDHVSAAAAAEQRHAIAV AVATAAAAEAAVATAQAAVEVARLTRPSYHPRERSAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLS HEGSRESAFSDTNSVFESRYLQEISERKSMSRDGSSIADDWDDRPRTIEEVKAMLQRRKDVAFKREKALSQAFSQQIWRNRRSPSMGNEGELQERSQWLD HWMPAKPWDNSSRARASTDQRDPIKTVEIETSQPCSYLAPNFGRTNQNQYHEHQRSNSINNGVTRSAPPPLHRAHQDASLRHSPITPSPSRTRPLQVRSA SPRCAREDRSCNSSRTPSLRSNYLYNGNLKQHGIRGGAASVSGNANATLPNYMATTESAKARLRSQSAPRQRPSTPERDRVGSARKRLLYPVPDPYGVGM GYGGVGYGHGFRSPSFKSVSGSHFGGLEQQSNYSSCCTDTFGAEISPSSTSDQRRWLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.014G104600 [exp]	0	1
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.004G189000 [exp]	2.44	0.8668	Pt-ATCSLA02.2
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Potri.004G183500 [exp]	2.44	0.8355
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.001G023400 [exp]	4.00	0.8859
AT1G45688			unknown protein		Potri.007G045000 [exp]	9.89	0.8354
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.018G133100 [exp]	9.94	0.8278
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117001 [exp]	11.74	0.8485
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.013G040401 [exp]	16.49	0.7809
					Potri.001G388450 [exp]	18.70	0.8087
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Potri.001G106900 [exp]	19.74	0.8386
					Potri.012G110500 [exp]	21.54	0.8034

Compare expression of checked genes

Potri.014G104600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.