Plant FIBer expression Database

Potri.014G105250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14430 50 / 9e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002683
[exp]
52 / 3e-10 AT3G14430 93 / 1e-26 unknown protein
Lus10030201
[exp]
50 / 9e-10 AT3G14430 89 / 3e-25 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G105250.1 pacid=42763199 polypeptide=Potri.014G105250.1.p locus=Potri.014G105250 ID=Potri.014G105250.1.v4.1 annot-version=v4.1
ATGGCCAGGAATGATATCAGGCAAGTTAGGACAAGTGGGAGCAAAAGGAATGAATCAGCACTGGCTCGAGTAATGAATGAGGTCTTTGCCTTTGTACGCT
TCGCTGAATTTGAGATCTTCTTCATTCTGTTCTTTCTCATTGCTTTTTTCTTCTTCAAGAATCTCACGTCCAGGCCTGAGTACAATCAAATCCTTGTAAA
GAAGCCTGGTGGTGCTGACTTTCTGCCTTACTAG
AA sequence
>Potri.014G105250.1 pacid=42763199 polypeptide=Potri.014G105250.1.p locus=Potri.014G105250 ID=Potri.014G105250.1.v4.1 annot-version=v4.1
MARNDIRQVRTSGSKRNESALARVMNEVFAFVRFAEFEIFFILFFLIAFFFFKNLTSRPEYNQILVKKPGGADFLPY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G14430 unknown protein Potri.014G105250
[exp]
0 1
AT3G43810 CAM7 calmodulin 7 (.1) Potri.016G024700
[exp]
2.23 0.6894 Pt-CAM6.1
AT4G27650 PEL1 PELOTA, Eukaryotic release fac... Potri.005G204500
[exp]
4.12 0.7228 PEL1.2
AT1G21840 UREF urease accessory protein F (.1... Potri.001G224400
[exp]
6.32 0.6904
AT1G54210 ATATG12, APG12,... AUTOPHAGY 12 A, AUTOPHAGY 12, ... Potri.001G169700
[exp]
6.48 0.7109
AT3G02520 GENERALREGULATO... general regulatory factor 7 (.... Potri.004G101700
[exp]
15.90 0.6481
AT4G05000 VPS28-2, VPS28-... vacuolar protein sorting-assoc... Potri.004G035500
[exp]
25.27 0.6636
AT2G37940 ERH1, AtIPCS2 enhancing RPW8-mediated HR-lik... Potri.006G093800
[exp]
28.19 0.6921
AT4G09830 Uncharacterised conserved prot... Potri.002G064800
[exp]
33.57 0.6260
AT3G54020 AtIPCS1 Arabidopsis Inositol phosphory... Potri.016G105700
[exp]
39.42 0.6775
Potri.004G236100
[exp]
39.79 0.6335

Potri.014G105250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.