Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00800 1967 / 0 SETH5 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002679 [exp] 2301 / 0 AT4G00800 1922 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10030199 [exp] 1767 / 0 AT4G00800 1498 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10030198 [exp] 82 / 2e-18 ND 39 / 1e-04
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00637 [poplar] [flax] Clathrin Region in Clathrin and VPS CL0020 [poplar] [flax] PF12816 [poplar] [flax] Vps8 Golgi CORVET complex core vacuolar protein 8
Representative CDS sequence Show only first row Show all	>Potri.014G105601.1 pacid=42763388 polypeptide=Potri.014G105601.1.p locus=Potri.014G105601 ID=Potri.014G105601.1.v4.1 annot-version=v4.1 ATGACTAAGAAACTAACGAGTACCAAACTCCCTATGGAACTCGACCTTGACTCCTTCCTTAATTCTCATTCCACCTCCGATTCTGACACCGATAACACCT CCGTCCCTCACCGTACTCTCGACGAAATTCTCAACGACTCCGATTCCTCTTCCCCTCCTTCATCCCCACCCTCCATCAAACAATCAGATCTCCCTCCCTC CTACCTCCAACACGCCGTCTCACTAGATTCCTCCACACAATCACAAATTCTCCAGGATCAATTAAAACCCACTTCACTTACTCGAATTACTAATTCACCG TGGCGCCTTCCTCCTCCGTCTTCTAGACAGTTGCCATCGCTTTTCGGTGGAGTGAGATCGAATGCGAAGCCAGGGGCAGCCCTTGCAGCGGCAGCTGCTG CCTCTCGTTCTGTTCCGACACCGCATGCCGCCGCGATCAAGTCCAGGAGATTGAGCAGCGGGAGTGGAACCTTCCAGACGATTCTCGATATAGCAGAATC AGGCTCCAGTGGTGGTGGCGATCATGAAATTGTGTCAAATTCATCGAACGGAGACTCAATTGAAAGATTCCAGTCCCAGTCAGAGGAGAAGATGGGTGGA TTATTTCAATCTGCTACAGCAGAGAATGCGATTCCGAATACAGAAGAGGATTTGAAGATTTCACGTGAAAGTGAAGGAGAGCCAGTTTTTCAAATCGAGG GGGAAGTACGGCTTGGTGATGATAGTGGTCAAGATATGTTGCATAATACTGGTTCGACCGCGAATTCTGATGCTAACTTAAATTTGGATGATGAAAATGC AGCTTGTGTTTCTAAAGATAAATTTGTGGAAGTGAGTGATTCGAGTGAAGTAGATATTATTAACTTGAATAATGTTGATTCCTTTAAAGACGAGGCGGTG AAAGGAGAGGGAAATAATTTGGAAGAAAATATGGACGAGGTTAAAGATGATGGGGTAGGTGTTTTTACTATTGATGATGGTGATGATGCAAGTTCAATGA GTGATATTTCGGAGCTTGTAGAGGAGAGAATCGAGCAACTGGAGAGTGAGATGATTAGTAAAAGGGCGGAGAAGAAACGGAAGTCTAGTCTGAAGCCGCT TGAATTGGCAGAAGAACTCGAGAAGAAAATGGCCTATACTGGATTGCATTGGGAGGAGGGTGCGGCTGCTCAGCCTATGAGACTTGAGGGTGTTCGGAGG GGGTCAACTAGTTTAGGATATTTTGATGTTGATTCTCATAATGTTATTACACAAACTGTTGGTTCCCAAACATTTAGGAGAGATCATGGTTCACCTCAAG TTTTGGCTGTTCATCTTAACTACATTGCAGTGGGAATGTCAAAAGGTGTCATTGTTGTTGTCCCTAGTAGATACTCTTCTCATAATGATGATAACATGGA TGCAAAGATGCTAATGCTTGGTTTACAAGGTGATCGATCTCATGCCCCAGTGACTTCGATGTGCTTTAATCAGCAAGGAGACATGCTCTTGGCTGGTTAC GGAGATGGTCACATTACTGTTTGGGATGTCCAGAGGGCATCAGCAGCAAAAGTTATTACTGGGGAGCATACTGCACCAGTTGTGCATGCATTCTTTCTGG GCCAGGATTCTCAAGTTACTCGTCAGTTTAAAGCAGTTACTGGTGATAGCAAGGGTCTGGTTCTGCTACATGCTTTCTCAGTGGTTCCCTTGCTTAACAG GTTCTCGTTCAAAACACAGTGTCTTCTTGATGGACAAAGAACGGGCACTGTGTTATCAGCTTCACCCCTTCTTCTTGATGAATCTTGTGGAGGTGCTTTG CCAGCCACACAGGGAAATTCTTCAGCATCATCCACCAGCATTAGTAGCATGATGGGTGGTGTAGTTGGGGGAGATGCAGGTTGGAAACTATTCAATGAGG GCTCTTCTTTGGTTGAAGAAGGTGTGGTCATATTTGTCACTCATCAAACTGCTTTGGTGGTTAGGCTCAGTCCCAGTTTACAGGTATATGCACAACTTTC TAGGCCAGATGGAGTTCGAGAGGGTTCCATGCCTTACACTGCATGGAAATGTACCACACAATCACATAGTTCATCACCTGACAATGTTCCAGAACATGTG GCAGAGAGAGTCTCATTGCTCGCAATTGCCTGGGATCGAAAAGTGCAAGTGGCAAAATTGGTCAAATCTGAGTTAAAAGTTTATGGAAAATGGTCCCTTG ACAGTGCAGCCATAGGTGTGGCTTGGTTGGATGATCATATGCTGGTGGTTCTCACGTTAACAGGACAACTATATTTGTTCGCAAAGGATGGCACTGTGAT TCACCAAACTAGTTTTGCTGTTGATGGTTCTAGGGGAGATGATCTAGCTGCATATCATACACACTTGATCAATATCTATGGGAACCCTGAGAAAGCTTAT CACAATTGTATAGGTGTAAGGGGAGCTTCTGTGTACATACTTGGACCAACACATCTTATTGTTTCCCGCCTTCTCCCATGGAAAGAGCGTATTCAGGTTC TGCGAAGAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACACTTTATGATGGCCAAGCTCATGGTGTTGTTGACCTTCCTAAATCAGTAGATGC TGTAAAGGAAGCCATAATGCCATATCTGGTAGAGTTGCTTATGTCATATGTAGATGAAGTATTTTCTTATATCTCAGTGGCTTTTTGCAATCAAATTGGA AAAGCGGAACAACAAGATGACTCAAAGACTGGAAGCAACTCAGTGCACTCTGAAATAAAAGAACAGTTCACACGTGTCGGTGGTGTTGCTGTAGAATTCT GTGTCCATATACAGCGGACTGACATCCTTTTTGACGAAATTTTCTCTAAATTTGTCTTTGTTCAACATAGAGATACATTTTTGGAGCTTTTGGAGCCATA TATATTGAGGGATATGCTGGGGTCTCTACCCCCTGAGATTATGCAAGCCCTAGTAGAGCATTACAGTAGCAAAGGGTGGTTGCAGCGAGTTGAGCAATGT GTCCTTCACATGGACATTTCCTCCTTGGATTTTAATCAGGTTGTCAGGCTATGCCGGGAGCATGGGTTATATGGTGCCTTGGTGTATCTTTTCAATAAAG GATTGGATGATTTCAGGACACCTTTAGAGGAGCTATTGGTTGTTTCAAGAACTAGTCAACAAGAGACTGCTGCTGCCCTTGGGTACAGGATGCTTGTTTA TCTGAAGTACTGCTTTTTAGGTCTCGCCTTTCCACCAGGACATGGGGCTCTTCCTGTCACACGTCTGTCATCTCTTAGGACCGAACTTGTGCAGTTTTTG CTGGAGAGTTCCGATGCCTCTAATCCACAGGCAGTGTCAAAAGGAACATACCTGAACTTGTATCATCTCTTACAGTTAGATACTGAAGCAACTTTAGATG TTTTGAGGTGTGCTTTTTTAGATGGTGAAAATCTGAAACGTGAGTTCTCTATGCAAGATGGTGCTGACACAAGTATGGAGGCTAAGCAAGAAAACAATAT TATGGCTGAAAGTCAGAATTTATGGATTCAGAATACTATAAATGCTCTTGTTCAAATTACCGAAAAACATATATCCCGAGCAGATGAGTCTGCTGTTGAT AATGTTGATACTCGATTTGTGGATGCATGGCCCTCAAAGAAAGACTTGGAAAATCTGTTTGAATTCATTGCATACCATGTTGCATGTAGGAAAGCTCATG TTTCAAAAGTTGTGCTGAGTCAAATTTTGGAGTACTTGACATCAGAAAGTACTGTCCCACCAAGTGTTCCTGCACACATCATTGAAACTTCAAAGGAGAG AGAGAAACAGGTGCTTGCACTTCTGGAAGTGGTGCCTGAGACTGATTGGAATGAGTCTTATGTGTTGCAGCTATGTGAGAAAGCACACTTTCACCAGGTT TGTGGCTTAATTCATACCATCAGACATCAGTATCTTGCTGCCTTGGATAGCTATATGAAAGACGTAGACGAACCCATTCATACTTTTGCCTACATTAACA ATATGTTAGAAAAGCTGAGTGACAATGATAGTGGTGCTTTTCGATCAGCTGTAATTTCTAGGATTCCTGAGTTGCTTGTCTTAAGCAGAGAGGGAACATT CTTCTTGGTCACTGACCATTTTCGTGTTGAAAGTCCACATATCCTCTCTGAATTACGCTCTCATCCACAGAGTCTTTTTCTGTATTTAAAGACTGTCATC GAGGTTCATTTGTCTGGAACCTTAGACTTTTCTAATTTAAAAAAAGCTGATGATATAGATGTTGCTGATGGAAGAAGGGTGAAAGATCAGTCAAAAGGAC TCACAGCTTATCTGGAAAGGATCTCTGATTTTCCTAAGTTCATGCGGAATAATCCTGTTCATGTGAATGATGATATGATTGAGCTTTATTTTGAGCTATT ATGTCAGTTTGAGCGCAATTCAGTTCTCAGATTCTTAGGGACTTTTGATAGCTATCGGGTGGAACATTGTTTACGCAAGTGCCAGGAATATGGGATAATA GATGCTGCTGCCTTTTTGTTGGAAAGGGTTGGTGATGCTGGAAGTGCTCTTTTACTCACACTTTCTGGTCTCAATGATAATTTTCCAGAGCTAGAGTCAG CTGTGGAAAGTGTGGTTTCAGATATGAGTGTTTCTGCCAGTAGTGATCATTACAGCACTGTTTTAAAATTGAAAGAGGTGGACAACATACGCAGTATATT AAATGCCTGTATTGGATTATGCCAGCGGAACACCCCTCGTTTACAACCTGAGGAATCTGAGATGCTCTGGTTCAGATTACTTGACTCGTTCTGTGTGCCT TTGATGGATTCCTATTCAGATAGAAGGGCATCAAAAGCAAAGAATTACAGTGGAGTGCTAGGTGAAGTTCTGGGCTCCCAAGAGGATGATGGGGCATGGG TAATCAAGTGGAAAATCTCCAGATCTTGCAAAGGTGCTCACTCCTTGAGGAAATTGTTTTCTATGTTCATCAAAGAGATTGTCGAGGGGATGATTGGATA CATTCGCCTTCCAACTATCATGTCAAAACTCCTCTCTGATAATGGTAGCCAGGAATTTGGTGATTTCAAAATTACGATACTGGGGATGCTTGGAACATAT GGCTTTGAAAGAAGAATTCTGGATACTGCCAAGTCCTTGATAGAGGATGACACATTTTACACCATGAGCTTACTAAAGAAGGGGGCGTCTCATGGCTATG CTCCCCGAAGTACTGTATGTTGTATATGCAACTGCCCACTTGCAAAGAATTCCAGTTTCCGTATTCGAGTTTTCAGTTGTGGTCATGCAACTCATCTTGA TTGCGAACTTGAAAATGAGTCATCAAGTAGGGGCCACTTATCCGGATGTCCTGTTTGCATGCCTAAGAAGAATACTCAAAGGGGGGCTAGAAACAAATCA GCACTTCCGGAGAATGGTTTAGTGAATAAGGTTTCCGCGAGACCACGGAGAGCACATGGAACTAGCATTTTACACCCACATGAAGATTTGTTAGAGAATT CCTATGGGCTTCAGCAAATATCACGGTTTGAGATCTTGTCTAGTCTCCAAAAAGATAAGAAATTAGTACAGATAGAAAGCATGCCTCAGCTGAGGCTTGC ACCACCTGCTGTTTATCATGAAAAGGTGAAGAAAGGACCTGATCTTTTAACAGGAGAGAGTAGCAGTGCTCTTGCAGAAGTCGAGAAACCAGGCAAAAGG AGGCAACTCAGAGAGGTAAAACTGAAAGGGTCATCTCTCCGGTTCCCACTAAAATCAAGCATATTCGGCAAGGAGAAGACGAACAAAGGCTGA
AA sequence Show only first row Show all	>Potri.014G105601.1 pacid=42763388 polypeptide=Potri.014G105601.1.p locus=Potri.014G105601 ID=Potri.014G105601.1.v4.1 annot-version=v4.1 MTKKLTSTKLPMELDLDSFLNSHSTSDSDTDNTSVPHRTLDEILNDSDSSSPPSSPPSIKQSDLPPSYLQHAVSLDSSTQSQILQDQLKPTSLTRITNSP WRLPPPSSRQLPSLFGGVRSNAKPGAALAAAAAASRSVPTPHAAAIKSRRLSSGSGTFQTILDIAESGSSGGGDHEIVSNSSNGDSIERFQSQSEEKMGG LFQSATAENAIPNTEEDLKISRESEGEPVFQIEGEVRLGDDSGQDMLHNTGSTANSDANLNLDDENAACVSKDKFVEVSDSSEVDIINLNNVDSFKDEAV KGEGNNLEENMDEVKDDGVGVFTIDDGDDASSMSDISELVEERIEQLESEMISKRAEKKRKSSLKPLELAEELEKKMAYTGLHWEEGAAAQPMRLEGVRR GSTSLGYFDVDSHNVITQTVGSQTFRRDHGSPQVLAVHLNYIAVGMSKGVIVVVPSRYSSHNDDNMDAKMLMLGLQGDRSHAPVTSMCFNQQGDMLLAGY GDGHITVWDVQRASAAKVITGEHTAPVVHAFFLGQDSQVTRQFKAVTGDSKGLVLLHAFSVVPLLNRFSFKTQCLLDGQRTGTVLSASPLLLDESCGGAL PATQGNSSASSTSISSMMGGVVGGDAGWKLFNEGSSLVEEGVVIFVTHQTALVVRLSPSLQVYAQLSRPDGVREGSMPYTAWKCTTQSHSSSPDNVPEHV AERVSLLAIAWDRKVQVAKLVKSELKVYGKWSLDSAAIGVAWLDDHMLVVLTLTGQLYLFAKDGTVIHQTSFAVDGSRGDDLAAYHTHLINIYGNPEKAY HNCIGVRGASVYILGPTHLIVSRLLPWKERIQVLRRAGDWMGALNMAMTLYDGQAHGVVDLPKSVDAVKEAIMPYLVELLMSYVDEVFSYISVAFCNQIG KAEQQDDSKTGSNSVHSEIKEQFTRVGGVAVEFCVHIQRTDILFDEIFSKFVFVQHRDTFLELLEPYILRDMLGSLPPEIMQALVEHYSSKGWLQRVEQC VLHMDISSLDFNQVVRLCREHGLYGALVYLFNKGLDDFRTPLEELLVVSRTSQQETAAALGYRMLVYLKYCFLGLAFPPGHGALPVTRLSSLRTELVQFL LESSDASNPQAVSKGTYLNLYHLLQLDTEATLDVLRCAFLDGENLKREFSMQDGADTSMEAKQENNIMAESQNLWIQNTINALVQITEKHISRADESAVD NVDTRFVDAWPSKKDLENLFEFIAYHVACRKAHVSKVVLSQILEYLTSESTVPPSVPAHIIETSKEREKQVLALLEVVPETDWNESYVLQLCEKAHFHQV CGLIHTIRHQYLAALDSYMKDVDEPIHTFAYINNMLEKLSDNDSGAFRSAVISRIPELLVLSREGTFFLVTDHFRVESPHILSELRSHPQSLFLYLKTVI EVHLSGTLDFSNLKKADDIDVADGRRVKDQSKGLTAYLERISDFPKFMRNNPVHVNDDMIELYFELLCQFERNSVLRFLGTFDSYRVEHCLRKCQEYGII DAAAFLLERVGDAGSALLLTLSGLNDNFPELESAVESVVSDMSVSASSDHYSTVLKLKEVDNIRSILNACIGLCQRNTPRLQPEESEMLWFRLLDSFCVP LMDSYSDRRASKAKNYSGVLGEVLGSQEDDGAWVIKWKISRSCKGAHSLRKLFSMFIKEIVEGMIGYIRLPTIMSKLLSDNGSQEFGDFKITILGMLGTY GFERRILDTAKSLIEDDTFYTMSLLKKGASHGYAPRSTVCCICNCPLAKNSSFRIRVFSCGHATHLDCELENESSSRGHLSGCPVCMPKKNTQRGARNKS ALPENGLVNKVSARPRRAHGTSILHPHEDLLENSYGLQQISRFEILSSLQKDKKLVQIESMPQLRLAPPAVYHEKVKKGPDLLTGESSSALAEVEKPGKR RQLREVKLKGSSLRFPLKSSIFGKEKTNKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00800		SETH5	transducin family protein / WD...		Potri.014G105601 [exp]	0	1
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Potri.017G101100 [exp]	1.41	0.8447
AT5G55060			unknown protein		Potri.011G089300 [exp]	1.73	0.8243
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.013G048500 [exp]	3.46	0.8220	CHR923
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	5.19	0.7877
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	5.47	0.8086
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	5.47	0.7827
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	5.65	0.7975
AT3G07660			Kinase-related protein of unkn...		Potri.002G217000 [exp]	5.65	0.7604
AT3G03810		EDA30	embryo sac development arrest ...		Potri.013G056200 [exp]	5.83	0.7594
AT1G77600			ARM repeat superfamily protein...		Potri.002G084300 [exp]	6.70	0.7615

Compare expression of checked genes

Potri.014G105601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.