Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01400 575 / 0 unknown protein AT5G46100 220 / 3e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G07740 182 / 5e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 181 / 1e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 176 / 7e-48 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 175 / 7e-48 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 171 / 2e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 174 / 4e-47 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09060 172 / 7e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 171 / 2e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057900 [exp] 209 / 4e-62 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 195 / 8e-55 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G204100 [exp] 186 / 3e-53 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G031600 [exp] 178 / 8e-50 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G103600 [exp] 176 / 2e-49 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 179 / 3e-49 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 172 / 4e-47 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 170 / 7e-47 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G102400 [exp] 171 / 1e-46 AT2G17525 756 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002675 [exp] 577 / 0 AT4G01400 570 / 0.0 unknown protein Lus10015397 [exp] 184 / 9e-53 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 182 / 4e-50 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005989 [exp] 178 / 1e-49 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026218 [exp] 176 / 2e-49 AT1G53330 440 / 2e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040869 [exp] 174 / 7e-49 AT1G07740 491 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042452 [exp] 173 / 2e-48 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 173 / 4e-48 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 172 / 2e-46 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038377 [exp] 168 / 2e-45 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G105900.4 pacid=42764672 polypeptide=Potri.014G105900.4.p locus=Potri.014G105900 ID=Potri.014G105900.4.v4.1 annot-version=v4.1 ATGCATAAATCATTCCTGGTTACCTGCAAAATTTTATTGTTAACGACTCCTCCTCGTACTCGTACTGTCCCAATCCTGCCAAAACCTCAATCACTCTTCT TTTACTCCTCATCACCCCACCATCACCAACAACACAAACGAGAACTAGAACCTTCCGATTCCCATCCAAATGCCAACACCAAATCCCCAATTGGGTCACC ATCTCGAGTCCAAAAACTCATAGCTTCCCAATCAGATCCTCTCTTAGCCAAAGAAATCTTCGACTACGCTTCTCGCCAACCCAATTTCCAACACTCTTAC TCATCCTATCTCATTCTCATTCTCAAACTCGGTCGAGCCAAATACTTCTCTTTCATTGATGACCTTCTCACTGACCTCAAATCCAAAAATTACCCCGTAA CCCAGACTCTTTTCTCTTACATAATCAACATCTACGGAAAAGCAAATCTCCCAGATGAAGCTCTCAAAATATTCTACACTATTCTCAAGTTCGACTGCAA TCCTTCGCCCAAACATTTAAATGGCATTCTTGAAATTCTTGTTTCTCACCACAACTATATTAAACCCGCTTTTGATCTTTTCAAGGATGCTCATACATAT GGCGTTTTCCCCAATACCAAGTCTTACAACATTTTGATACGTGCTTTTTGTTTAAATGGGCAAATAAGTATGGCATACTCATTGTTCAATCAAATGTTTA AGAGAGATGTTATGCCGGATGTTGAGTCTTATAGGATTTTGATGCAGGCTTTATGTAGAAAAAGTCAGGTTAATGGAGCTGTTGATTTGTTGGAGGATAT GTTGAATAAAGGATATGTACCGGATGCATTGAGTTATACTACTTTGTTGAATAGTTTGTGTAGGAAGAAGAAGCTCAGGGAGGCTTATAAGCTTCTTTGT AGAATGAAGGTTAAAGGATGCAATCCTGATATTATTCATTATAATACGGTTATATTGGGTTTTTGTAGAGAGGGGCGTGCAATGGATGCTTGTAAGGTTC TTGAGGATATGGAGTCTAATGGGTGCATGCCAAATTTGGTGTCTTATAGGACTTTGGTTGGTGGGTTATGTGATCAAGGGATGTTTGATGAGGCAAAGAG TCACCTTGAGGAAATGATGATGAAGGGATTTTCTCCGCATTTTGCTGTTTCGAATGCTTTGATAAAGGGTTTTTGCAATGTTGGTAAGATTGAGGAAGCT TGTGGTGTTGTGGAGGAATTGCTGAAGCATGGAGAAGCTCCACATACGGAGACCTGGGTGATGATGGTTTCTAGGATTTGTGAAGTGGATGATTTGCAGA GAATTGGGGAAATTTTGGATAAAGTTAAGAAGGTAGAATTAAAGGGTGACACTAGAATAGTGGAGGCTGGTATTGGTTTGGAGGAGTACTTGATCAAAAG GACACAGCAAAAAGCATGGAGAGGTTGA
AA sequence Show only first row Show all	>Potri.014G105900.4 pacid=42764672 polypeptide=Potri.014G105900.4.p locus=Potri.014G105900 ID=Potri.014G105900.4.v4.1 annot-version=v4.1 MHKSFLVTCKILLLTTPPRTRTVPILPKPQSLFFYSSSPHHHQQHKRELEPSDSHPNANTKSPIGSPSRVQKLIASQSDPLLAKEIFDYASRQPNFQHSY SSYLILILKLGRAKYFSFIDDLLTDLKSKNYPVTQTLFSYIINIYGKANLPDEALKIFYTILKFDCNPSPKHLNGILEILVSHHNYIKPAFDLFKDAHTY GVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLC RMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMMMKGFSPHFAVSNALIKGFCNVGKIEEA CGVVEELLKHGEAPHTETWVMMVSRICEVDDLQRIGEILDKVKKVELKGDTRIVEAGIGLEEYLIKRTQQKAWRG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01400			unknown protein		Potri.014G105900 [exp]	0	1
AT2G04620			Cation efflux family protein (...		Potri.005G110300 [exp]	2.00	0.8978	PtrMTP12
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.003G002950 [exp]	3.00	0.8622
AT3G51050			FG-GAP repeat-containing prote...		Potri.007G017600 [exp]	6.48	0.7841
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075900 [exp]	8.00	0.8577
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.003G090900 [exp]	9.21	0.8047
AT1G15780			unknown protein		Potri.003G014156 [exp]	10.09	0.7780
AT2G33730			P-loop containing nucleoside t...		Potri.012G045800 [exp]	14.89	0.8487
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Potri.006G231300 [exp]	23.04	0.8341
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Potri.006G102000 [exp]	24.71	0.7816
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Potri.019G130300 [exp]	25.00	0.8567

Compare expression of checked genes

Potri.014G105900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.