Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24470 271 / 4e-81 APRR5 pseudo-response regulator 5 (.1) AT2G46790 247 / 2e-74 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G60100 188 / 5e-52 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G02810 170 / 2e-44 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G61380 122 / 7e-29 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT3G16857 102 / 3e-22 GARP ARR1 response regulator 1 (.1.2) AT2G46670 92 / 2e-21 CCT motif family protein (.1) AT2G25180 96 / 3e-20 GARP ARR12 response regulator 12 (.1) AT4G16110 95 / 4e-20 GARP ARR2 response regulator 2 (.1) AT4G31920 93 / 1e-19 GARP ARR10 response regulator 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G179800 [exp] 1049 / 0 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.012G005900 [exp] 462 / 5e-154 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.015G002300 [exp] 459 / 1e-152 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.008G046200 [exp] 191 / 3e-51 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.010G215200 [exp] 187 / 4e-50 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.015G061900 [exp] 122 / 5e-29 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.018G111300 [exp] 99 / 3e-21 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 97 / 1e-20 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.008G181000 [exp] 94 / 1e-19 AT1G67710 383 / 5e-127 response regulator 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008878 [exp] 350 / 8e-111 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1) Lus10023230 [exp] 341 / 2e-107 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10032934 [exp] 330 / 8e-104 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10015571 [exp] 327 / 1e-102 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10008879 [exp] 226 / 2e-64 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10023229 [exp] 220 / 1e-63 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10014018 [exp] 172 / 6e-45 AT5G02810 452 / 6e-148 pseudo-response regulator 7 (.1) Lus10000566 [exp] 127 / 1e-30 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10021629 [exp] 126 / 4e-30 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019077 [exp] 123 / 3e-29 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.014G106000.13 pacid=42764551 polypeptide=Potri.014G106000.13.p locus=Potri.014G106000 ID=Potri.014G106000.13.v4.1 annot-version=v4.1 ATGGGTGAGGTTGTGGTGAGTAGCAGCAGTGAAGAGGTGGAGGGGATGGCGGTGGAGTTAGAGACAGAGAAGAAGGATATTGGATCATCGGAGGTGGTTC GATGGGAAAAGTTTCTACCAAGGATGGTGCTCAGCGTTCTTTTGGTTGAAGCTGATGATTCTACTCGTCAGATTATTGCTGCTCTTCTCCGAAAATGCAG TTACAGAGTTGCTGCTGTTCCTGATGGATTAATGGCATGGGAGACTTTGAAGGGTGGACCTCATAACATAGATCTCATATTAACTGAAGTGGAGCTGCCT TTAATATCAGGATATGCACTTCTTACTTTGGTCACGGAGCATGCTGTTTGCAAAAACATTCCTGTCATAATGATGTCTTCACAAGATTCAATTAGCATGG TTCTGAAGTGCATGTTAAAAGGAGCAGCTGACTTTCTCATTAAGCCTGTTAGGAAGAATGAATTGAGGAACTTGTGGCAGCATGTTTGGAGGAGGCAAAC TCTAAGTGCTGGACAAATCCCTCAAAACTTGCATAAAGTCGAGGCCTCATCTGAAATCAACGCTGCAAGCAATGGTTCGAGTGACTCTGTGATGTCTTCG CGGAAAAATAAGGATTGCAGCGAGAAAGGGTGTGATGCCCAAAGCTCTTGTACGACCCCTTGCTTGGAAGCTGAGAGTGCTCACATGCAAAATATGCAGG GACTTTCACAGATGAAGTATAGGAGTGCTTCAAATCTGAGCAACACAGATAGAGAGGAGTTCGAAGAGTGTGCCAAATTAGATAAAAGCCCTGTAACTCC TGAGAACAAGACTGGAGTATTTGTACCAGAAAGGCCGAACCGAATGGAGTCAGATGGAGAACCGTGCAGTGGAGCTTATAATCCAACTTCTTTGAGACTG CTAGAAGAGCACGCTTGTGCCAAGTCAGCAATTCAAGATGAAAATTCGAGGCCAGAAAATGACAGGGGGCTTGCTAATAGCTCCTTTGGCTGCGATGATG TACCTTTTGAATCCTCAAGTGGAGCCATTGACTTGATTGGTACCTTAAATAATGGTCCAAAGACCACATATGTACACTCTAGTTTACATTATGGCACAAA CAAGTTCGAATTTGCTCCACAGCTTGAACTCTCTCTCAAAAGATTGTATCCCAGCAGCTCAAAGAACCAGGGGGTAGATGAAAGACATGCACTGAACCAT TCCCATGCCTCAGCCTTCTCATGGTACAATAGCAAGACATTGCAACCTCCTTTTCCAGCATCTGCCAGTAATGGTTCTGATTCCAAGGAAGAAGCCAGCA AGTCTCCTGAGCTGTCATCCAATCAACATGCTCAAAACATTAATTCTATTTCTCAGAGACATGGTGCCACTTTGAGTGGGAATCAAGATATGACCATTCC AATCATTGGCCAATCTGGGAAGGCTGAATTAGCATATCCAAGCCCTCGACATGGATTGATTCCTGTTCGAAGGGGAATGCTCGACAATATATCTACCGAA TACGGTCATGATTTCTCCCCTCTATATTATACTCAATCAAGTGCAGCATGGAGTCCCAAACTTGCTGGGTGGCAACAGTCTCCATATCCTCTTAGTACCT CAATTCATTCAAATCCTGATATTCATGATTCTGAGAAAAATCACAGGTGTTCTGATGAAACTACTTACAACTCTGTTGACCAAAATGATCATCAGCAGAA CAATAAGGGACCTGCGGATGAAGTGAGACATGACTCACCTGCTGCTGGTCAGAGTACTGGTGGTTTATGTAATGGTGTTATCAATCATAATAAGAGCAGT GCATATGAAAGCTTTGGCAGTAGAGATGATGGAAATGCCAAAGAGAAGGCCATGGCTCAAGATAATTTGAATGATGGGGACAACTTCAATCGTGATGGTT TTAGAGGGATAGATTCCCTTCGCTCCAGCCAAAGAGAAGCTGCTCTAACAAAGTTCCGACTGAAGCGGAAAGATCGATGCTATGAGAAAAAGGTTCGATA CCAAAGCCGGAAAAGACTGGCAGAGCAACGTCCTCGGGTGAAAGGACAGTTTGTTCGTCAAGTGCAAAATGATTCCCCAATTGCTAATGGTTGA
AA sequence Show only first row Show all	>Potri.014G106000.13 pacid=42764551 polypeptide=Potri.014G106000.13.p locus=Potri.014G106000 ID=Potri.014G106000.13.v4.1 annot-version=v4.1 MGEVVVSSSSEEVEGMAVELETEKKDIGSSEVVRWEKFLPRMVLSVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLMAWETLKGGPHNIDLILTEVELP LISGYALLTLVTEHAVCKNIPVIMMSSQDSISMVLKCMLKGAADFLIKPVRKNELRNLWQHVWRRQTLSAGQIPQNLHKVEASSEINAASNGSSDSVMSS RKNKDCSEKGCDAQSSCTTPCLEAESAHMQNMQGLSQMKYRSASNLSNTDREEFEECAKLDKSPVTPENKTGVFVPERPNRMESDGEPCSGAYNPTSLRL LEEHACAKSAIQDENSRPENDRGLANSSFGCDDVPFESSSGAIDLIGTLNNGPKTTYVHSSLHYGTNKFEFAPQLELSLKRLYPSSSKNQGVDERHALNH SHASAFSWYNSKTLQPPFPASASNGSDSKEEASKSPELSSNQHAQNINSISQRHGATLSGNQDMTIPIIGQSGKAELAYPSPRHGLIPVRRGMLDNISTE YGHDFSPLYYTQSSAAWSPKLAGWQQSPYPLSTSIHSNPDIHDSEKNHRCSDETTYNSVDQNDHQQNNKGPADEVRHDSPAAGQSTGGLCNGVINHNKSS AYESFGSRDDGNAKEKAMAQDNLNDGDNFNRDGFRGIDSLRSSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVQNDSPIANG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.014G106000 [exp]	0	1
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Potri.012G038300 [exp]	4.69	0.6699	Pt-EPR1.2
AT4G38960	CO		B-box type zinc finger family ...		Potri.009G124400 [exp]	8.24	0.6042
AT4G36195			Serine carboxypeptidase S28 fa...		Potri.007G015300 [exp]	11.22	0.5996
AT5G49610			F-box family protein (.1)		Potri.007G027300 [exp]	13.22	0.5894
AT2G26800			Aldolase superfamily protein (...		Potri.009G068600 [exp]	20.39	0.5978
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G150000 [exp]	21.21	0.5674
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.010G194300 [exp]	21.63	0.5603	Pt-SYP81.2
AT5G64500			Major facilitator superfamily ...		Potri.009G081100 [exp]	24.14	0.5623
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.001G356900 [exp]	27.12	0.5459	SOYAP4.1
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.013G155600 [exp]	31.12	0.5429

Compare expression of checked genes

Potri.014G106000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.