Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01410 185 / 5e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 115 / 5e-32 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 110 / 4e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35960 107 / 6e-29 NHL12 NDR1/HIN1-like 12 (.1) AT3G52470 105 / 3e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 102 / 7e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11660 101 / 2e-26 NHL1 NDR1/HIN1-like 1 (.1) AT4G09590 100 / 5e-26 NHL22 NDR1/HIN1-like 22 (.1) AT5G06330 97 / 5e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35970 97 / 1e-24 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180000 [exp] 265 / 1e-90 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 114 / 2e-31 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204200 [exp] 102 / 1e-26 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.016G071500 [exp] 99 / 9e-26 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.005G088000 [exp] 99 / 1e-25 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 99 / 2e-25 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 97 / 1e-24 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G027400 [exp] 72 / 2e-15 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 71 / 1e-14 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030193 [exp] 200 / 4e-64 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10010103 [exp] 198 / 4e-64 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021286 [exp] 105 / 7e-28 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 101 / 2e-26 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10000157 [exp] 95 / 4e-24 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10004202 [exp] 95 / 6e-24 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10043410 [exp] 94 / 3e-23 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10029406 [exp] 93 / 4e-23 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1) Lus10032932 [exp] 91 / 3e-22 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034175 [exp] 89 / 2e-21 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.014G106100.2 pacid=42763256 polypeptide=Potri.014G106100.2.p locus=Potri.014G106100 ID=Potri.014G106100.2.v4.1 annot-version=v4.1 ATGGCAAAAGAGCACCAACGAAAAGAAAACAACCCACACCTACTCACAACGAAAGAGAAAGGCGCTGGTCATAAAAACCCACGCCATGCTCTCTTCACAT TCATCACCACCTTCCTTCTCTTAGCAGGTCTTGCAGTTCTCATAGTCTGGTTAATTTACAGGCCCCACAAGCCCCGGTTCACTGTAGTTGGGGCTGCTGT ATACGACCTTAACACCACATCCCCACCTTTCATTTCAACCTCCATGCAGTTCACTATTTTCACTAGAAACCCCAACACGAGGGTCTCGATCATGTATGAT AAACTCACTGCTTATGTATCATACAGGAACCAAGCGATAACTCCCCCACTGTTATTGCCTCCACTTTATCAAGAGAAAAAGAGCACAGTGGTCATGTCTC CGGTGCTTGTCGGGGCAGGGGTTCCGGTGTCAGTGGAAGTTTCAGATGGGTTGGTGAGGGATGAGGCATATGGGGTTGTGGCGTTGAGGGTGGTGTTGCT GGGCAGGTTGAGGTGGAAGGCTGGGGGCATAAAGACTGGGAGATATGGAGTTTATGTGAAGTGTGATATCGTGGTGGGTTTGAAGAAGGGTTTTGTAGGG CCAGTGCCTTTGCTTGGGTCTCCACAGTGTAAAGTTGACATATGA
AA sequence Show only first row Show all	>Potri.014G106100.2 pacid=42763256 polypeptide=Potri.014G106100.2.p locus=Potri.014G106100 ID=Potri.014G106100.2.v4.1 annot-version=v4.1 MAKEHQRKENNPHLLTTKEKGAGHKNPRHALFTFITTFLLLAGLAVLIVWLIYRPHKPRFTVVGAAVYDLNTTSPPFISTSMQFTIFTRNPNTRVSIMYD KLTAYVSYRNQAITPPLLLPPLYQEKKSTVVMSPVLVGAGVPVSVEVSDGLVRDEAYGVVALRVVLLGRLRWKAGGIKTGRYGVYVKCDIVVGLKKGFVG PVPLLGSPQCKVDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01410			Late embryogenesis abundant (L...		Potri.014G106100 [exp]	0	1
AT4G17870		RCAR11, PYR1	regulatory component of ABA re...		Potri.003G091700 [exp]	4.00	0.9097
AT1G29520			AWPM-19-like family protein (....		Potri.001G354500 [exp]	4.47	0.9081
AT5G57390	AP2_ERF	PLT5, EMK, CHO1...	PLETHORA 5, EMBRYOMAKER, CHOTT...		Potri.018G091600 [exp]	11.22	0.8833
AT1G17030			unknown protein		Potri.001G381400 [exp]	12.80	0.8660
					Potri.014G141600 [exp]	17.60	0.8731
AT1G54330	NAC	ANAC020	NAC domain containing protein ...		Potri.010G174600 [exp]	18.00	0.8844
AT5G57340			unknown protein		Potri.018G090000 [exp]	18.16	0.8739
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.011G054300 [exp]	18.49	0.8900
AT2G27550		ATC	centroradialis (.1)		Potri.009G165100 [exp]	19.07	0.8751	Pt-TFL1.1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125601 [exp]	19.89	0.8966

Compare expression of checked genes

Potri.014G106100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.