Plant FIBer expression Database

TMP14.2 (Potri.014G106400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol TMP14.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46820 154 / 2e-48 PSI-P, TMP14, PTAC8, PSAP THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
AT1G52220 85 / 4e-21 unknown protein
AT4G01150 76 / 8e-18 unknown protein
AT4G38100 61 / 8e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G180400
[exp]
211 / 1e-70 AT2G46820 137 / 1e-41 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
Potri.001G184700
[exp]
82 / 4e-20 AT1G52220 160 / 3e-51 unknown protein
Potri.014G093900
[exp]
79 / 1e-18 AT4G01150 181 / 3e-59 unknown protein
Potri.002G166800
[exp]
76 / 1e-17 AT4G01150 188 / 6e-62 unknown protein
Potri.005G147801
[exp]
59 / 2e-11 AT4G38100 107 / 1e-29 unknown protein
Potri.003G052200
[exp]
55 / 8e-10 AT1G52220 88 / 2e-22 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030191
[exp]
186 / 8e-61 AT2G46820 169 / 4e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
Lus10002673
[exp]
185 / 3e-60 AT2G46820 170 / 2e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
Lus10012645
[exp]
76 / 2e-17 AT4G01150 212 / 3e-71 unknown protein
Lus10010132
[exp]
76 / 2e-17 AT4G01150 215 / 2e-72 unknown protein
Lus10012739
[exp]
64 / 1e-12 AT4G38100 135 / 3e-40 unknown protein
Lus10002647
[exp]
57 / 5e-10 AT4G38100 130 / 5e-38 unknown protein
Lus10003031
[exp]
55 / 1e-09 AT4G01150 153 / 3e-48 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14159 CAAD CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Representative CDS sequence
>Potri.014G106400.3 pacid=42762470 polypeptide=Potri.014G106400.3.p locus=Potri.014G106400 ID=Potri.014G106400.3.v4.1 annot-version=v4.1
ATGGCTTCAACTTCCTCCACACCCCTATCAATCTCCTCATCATCAAGCCTCATTGATGCCAAGGCTTCTCGCCAATCAGCAGCTGCATCACCACAGTGTG
TGAGCCTCCCTACACTCCCCCCTCCTCCTGTCCAGCCCCAAAACCGCCCCTGGAAAGCCACTGCTTACTGTCGAAAGATAGCTCGCAATGTTATGACCAT
GGCCACAGGAGAGGCTCCAGCAGAAGTTGCTTCAACTGAGCTTCCAGAGATTGTCAAGACAGTTCAAGAGGCTTGGGATAAAGTTGAAGACAAGTATGCA
GTGAGTTCACTTGTGGTAGCTGGTGGAGTTGCCCTCTGGGGTTCGACAGGGTTGATCTCGGCAATCGACAGGCTTCCTTTGATTCCTGGGGTTCTTGAGC
TTGTTGGAATTGGGTACAGTGGATGGTTTGCATACAAGAACCTGGTTTTCAAACCTGACAGGGAAGCTTTAATCACGAAAATAAAAGACACATACAAGGA
AGTAATCGGCAGCAGCTAA
AA sequence
>Potri.014G106400.3 pacid=42762470 polypeptide=Potri.014G106400.3.p locus=Potri.014G106400 ID=Potri.014G106400.3.v4.1 annot-version=v4.1
MASTSSTPLSISSSSSLIDAKASRQSAAASPQCVSLPTLPPPPVQPQNRPWKATAYCRKIARNVMTMATGEAPAEVASTELPEIVKTVQEAWDKVEDKYA
VSSLVVAGGVALWGSTGLISAIDRLPLIPGVLELVGIGYSGWFAYKNLVFKPDREALITKIKDTYKEVIGSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46820 PSI-P, TMP14, P... THYLAKOID MEMBRANE PHOSPHOPROT... Potri.014G106400
[exp]
0 1 TMP14.2
AT3G15110 unknown protein Potri.011G097800
[exp]
1.00 0.9891
AT1G18060 unknown protein Potri.012G052300
[exp]
3.00 0.9830
AT1G64770 PnsB2, NDH45, N... Photosynthetic NDH subcomplex... Potri.019G034100
[exp]
3.16 0.9794
AT5G52010 C2H2ZnF C2H2-like zinc finger protein ... Potri.014G025100
[exp]
3.74 0.9704
AT3G44620 protein tyrosine phosphatases;... Potri.009G146800
[exp]
4.00 0.9814
AT1G51110 Plastid-lipid associated prote... Potri.001G011700
[exp]
6.32 0.9751
AT3G05625 Tetratricopeptide repeat (TPR)... Potri.013G012400
[exp]
9.48 0.9682
AT5G22620 phosphoglycerate/bisphosphogly... Potri.004G187700
[exp]
9.53 0.9780
AT4G24770 CP31, ATRBP33, ... ARABIDOPSIS THALIANA RNA BINDI... Potri.012G090200
[exp]
10.09 0.9790
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Potri.013G117000
[exp]
12.96 0.9731

Potri.014G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.